DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp and Nid2

DIOPT Version :10

Sequence 1:NP_523495.2 Gene:Tsp / 33941 FlyBaseID:FBgn0031850 Length:1060 Species:Drosophila melanogaster
Sequence 2:NP_032721.2 Gene:Nid2 / 18074 MGIID:1298229 Length:1403 Species:Mus musculus


Alignment Length:891 Identity:192/891 - (21%)
Similarity:280/891 - (31%) Gaps:323/891 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   206 DVRGWYEP-------TIAREGVVDHRHQEVPTDVERGDIPVLNGD-------------CEDALAR 250
            ||...:.|       |...||:....:..:.|::| |.:|.:..:             ..|::..
Mouse   638 DVEVTFHPGEERVRITQTAEGLDPENYLSIKTNIE-GQVPFIPANFTAHITPYKEFYHYRDSVVT 701

  Fly   251 SLSD---LLALVKLLREDVAHQRQEIAYLRMLLENCAGCKN-----------PLTTD-------- 293
            |.|.   .|....:.:....|..|.|.|        ..|::           .||.|        
Mouse   702 SSSSRSFSLTSGSINQTWSYHIDQNITY--------QACRHAPRHLAIPATQQLTVDRAFALYSE 758

  Fly   294 ----------NQL-RIEPDCR--SANPCYPGVECLDSAAGPRCG---------HCPLGFIGDGKS 336
                      ||: .:|.|..  ..||||.|....|:.|  ||.         .|..||.|||:|
Mouse   759 DEGVLRFAVTNQIGPVEVDSAPVGVNPCYDGSHTCDTTA--RCHPGTGVDYTCECTPGFQGDGRS 821

  Fly   337 CKPGVTCA--HHMCYPGVQCHDTVNGAQCDSCPAGYE--GDGRTCSL----RNPCLD---TPCPS 390
            |.....||  .|.|.|...|.:.|...:|: |.:|||  .|..||.|    .|||||   |..|.
Mouse   822 CVDVNECATGFHRCGPNSVCVNLVGSYRCE-CRSGYEFADDQHTCILIAPPPNPCLDGSHTCAPE 885

  Fly   391 G-AQCLQVGYPPYFHCISCPMGHEVNGTSCRDMNECLLYDPCDELATCTNLSPGFQCSPCPVGFD 454
            | |:|:..|                 |:|                         |.|: |..||.
Mouse   886 GQARCIHHG-----------------GSS-------------------------FSCA-CLPGFI 907

  Fly   455 GTHAHGYFADYYSVDYRRQTCLDVDECRTGFFRCPEHSTCINEIGSYRCQCHEGYVTNGTYSCLD 519
            ||   |:            .|.|||||...  ||.|.:.|.|..||:.|:|..||          
Mouse   908 GT---GH------------QCSDVDECAEN--RCHEAAICYNTPGSFSCRCQPGY---------- 945

  Fly   520 RSSVFMCPDGTVCDRNAVCL-------RMDNIRH---------------------KCHCNVG--W 554
            |...|.|...||.:.:...|       |....:|                     :||.:.|  |
Mouse   946 RGDGFHCTSDTVPEDSISGLKPCEYQQRYAQTQHAYPGSRIHIPQCDDQGNFVPLQCHGSTGFCW 1010

  Fly   555 A--GNG-LICGRDTDVD------GWPDQAIGCPELRCQRDNCPKLPNSGQEDADLDGHGDGCDDD 610
            .  .|| .:.|..|...      |.|.:....|...|:|.....|.:.|....| |.:...|||.
Mouse  1011 CVDRNGHEVPGTQTPPGSTPPHCGPPPEPTQRPRTVCERWRESLLEHYGGTPRD-DQYVPQCDDL 1074

  Fly   611 ADGDNVQ--NSQDNCWLAYNTEQLDSDGDKVGDVCDNCVLKYNPRQLDTDEDGLGDECDGDIDND 673
            .....:|  ...|.||.      :|.||.::              |....:.|....|       
Mouse  1075 GHFIPLQCHGKSDFCWC------VDKDGREL--------------QGTRSQPGTRPAC------- 1112

  Fly   674 SIPNALDNCPLLPNPSQSDVDNDGVG-----------------------DACDNCPNLPNP---- 711
             ||....  |::....:.||....||                       ||.....:|...    
Mouse  1113 -IPTVAP--PVVRPTPRPDVTPPSVGTFLLYAQGQQIGHLPLNGSRLQKDAARTLLSLHGSIVVG 1174

  Fly   712 ---DQKDRDMDFVGDACHRDIDG---DDDGVPNSLDNCPMVSNSDQLDTD--------GDGTGDE 762
               |.::| |.:..|...|.|..   :....|.::....::| .:.|..|        .|...|:
Mouse  1175 IDYDCRER-MVYWTDVAGRTISRASLEAGAEPETIITSGLIS-PEGLAIDHFRRTMYWTDSGLDK 1237

  Fly   763 CD-DDMDG---------DGI-PNYKDNCPLAKNPKQDDFNR----------NGKGDSCEDDEDVD 806
            .: .::||         |.: |......|:..|....|:||          :|:......::|: 
Mouse  1238 IERAELDGSERKVLFHTDLVNPRAITVDPIRGNLYWTDWNREAPKIETSSLDGENRRILINKDI- 1301

  Fly   807 GVPNGMDNCPNNSMIHHTDFRTLQ---TIPLDPKGLSQADPNWVVHANGTEIVQT-LNSDPGLAV 867
            |:|||:...|.:.::...|..|.:   |:|               ...|..::|. ||....:..
Mouse  1302 GLPNGLTFDPFSKLLCWADAGTKKLECTLP---------------DGTGRRVIQNHLNYPFSIVS 1351

  Fly   868 GKDAFGGVDF--DGTFYINDD----TDD---DYAGFVFSYQSSYKY 904
            ..|.|...|:  ||...:|.|    ||:   :....::...:.|.|
Mouse  1352 YADHFYHTDWRRDGVISVNKDSGQFTDEFLPEQRSHLYGITAVYPY 1397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TspNP_523495.2 coiled coil 245..286 CDD:293927 8/43 (19%)
TSPcc_insect 245..286 CDD:293927 8/43 (19%)
EGF_CA 421..457 CDD:238011 6/35 (17%)
EGF_CA 477..508 CDD:429571 14/30 (47%)
TSP3 repeat_1C 563..595 CDD:275367 7/37 (19%)
TSP3 repeat_short 632..654 CDD:275365 3/21 (14%)
TSP_3 656..690 CDD:367074 5/33 (15%)
TSP3 repeat_long 656..690 CDD:275366 5/33 (15%)
TSP3 repeat_short 691..713 CDD:275366 7/51 (14%)
TSP_3 714..751 CDD:367074 7/39 (18%)
TSP3 repeat_long 714..751 CDD:275365 7/39 (18%)
TSP3 repeat_short 752..787 CDD:275366 10/53 (19%)
TSP_3 789..822 CDD:367074 10/42 (24%)
TSP_C 841..1037 CDD:461725 15/74 (20%)
Nid2NP_032721.2 NIDO 108..275 CDD:214712
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 323..403
EGF_3 511..546 CDD:463759
nidG2 548..780 CDD:469646 26/150 (17%)
EGF_3 786..822 CDD:463759 13/37 (35%)
EGF_CA 824..866 CDD:214542 14/42 (33%)
EGF_3 919..952 CDD:463759 14/44 (32%)
Cell attachment site 946..948 1/1 (100%)
TY 967..1028 CDD:238114 10/60 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1021..1043 4/21 (19%)
TY 1047..1112 CDD:238114 18/85 (21%)
LY 1162..1200 CDD:214531 7/38 (18%)
LDL-receptor class B 1 1182..1225 9/44 (20%)
LY 1206..1248 CDD:214531 7/42 (17%)
LDL-receptor class B 2 1226..1268 7/41 (17%)
LY 1249..1293 CDD:214531 8/43 (19%)
LDL-receptor class B 3 1269..1313 11/44 (25%)
LY 1294..1336 CDD:214531 10/57 (18%)
LDL-receptor class B 4 1314..1355 8/55 (15%)
LDL-receptor class B 5 1357..1401 9/41 (22%)
Blue background indicates that the domain is not in the aligned region.

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