DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp and npnt

DIOPT Version :10

Sequence 1:NP_523495.2 Gene:Tsp / 33941 FlyBaseID:FBgn0031850 Length:1060 Species:Drosophila melanogaster
Sequence 2:XP_012810956.1 Gene:npnt / 100488614 XenbaseID:XB-GENE-952278 Length:681 Species:Xenopus tropicalis


Alignment Length:297 Identity:85/297 - (28%)
Similarity:117/297 - (39%) Gaps:63/297 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   302 CRSANPCYPGVECLDSAAGPRCGHC-PLGFIGDGKSCKPGVTC-AHHMCYPGVQCHDTVNGAQCD 364
            ||..|    .::|....|....|.| |..::...:..  .|.| :..:|.|..:..|.|...:| 
 Frog    36 CRYGN----RIDCCWGWARQSWGQCQPFYYVLRQRIA--SVRCRSQAICQPACKHGDCVGPNKC- 93

  Fly   365 SCPAGYEGDGRTCSLRNPCLDTPCPSGAQCLQVGYPPYFHCIS--CPMGHEVNGTSCRDMNEC-L 426
            .|..||  .|:||:..:..|.|            .|.::|.:.  .|:.....|....|:||| |
 Frog    94 KCHPGY--TGKTCNQDDELLTT------------VPEWYHEVPFLYPVEAPATGVPPGDLNECGL 144

  Fly   427 LYDPCDELATCTNLSPGFQCSPCPVGF----DGTHAHG---------YFADYYSVDYR------- 471
            ...||.  ..|.|....::|. |..|:    ||:.::.         |..|....|.|       
 Frog   145 KPRPCK--YRCMNTYGSYKCY-CLNGYMLMPDGSCSNALTCSMANCQYGCDVVKGDVRCRCPSPG 206

  Fly   472 ------RQTCLDVDECRTGFFRCPEHSTCINEIGSYRCQCHEGY---VTNGTYSCLDRSSVFMCP 527
                  .:||:|||||.||...||....|:|..|||.|:|||||   ...|.|.|.|   :..|.
 Frog   207 LQLGPDGRTCVDVDECATGKVVCPRQRKCVNTFGSYICKCHEGYDLIHAAGKYQCFD---IDECY 268

  Fly   528 DGTV-CDRNAVCLRMDNIRHKCHCNVGWAGNGLICGR 563
            .|.. |.:.|.|..... .:||.|:.|:.|||..|.|
 Frog   269 TGQYQCSQFARCYNTPG-SYKCKCSEGYRGNGAECSR 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TspNP_523495.2 coiled coil 245..286 CDD:293927
TSPcc_insect 245..286 CDD:293927
EGF_CA 421..457 CDD:238011 14/40 (35%)
EGF_CA 477..508 CDD:429571 17/30 (57%)
TSP3 repeat_1C 563..595 CDD:275367 1/1 (100%)
TSP3 repeat_short 632..654 CDD:275365
TSP_3 656..690 CDD:367074
TSP3 repeat_long 656..690 CDD:275366
TSP3 repeat_short 691..713 CDD:275366
TSP_3 714..751 CDD:367074
TSP3 repeat_long 714..751 CDD:275365
TSP3 repeat_short 752..787 CDD:275366
TSP_3 789..822 CDD:367074
TSP_C 841..1037 CDD:461725
npntXP_012810956.1 FXa_inhibition 142..176 CDD:464251 11/36 (31%)
cEGF 199..221 CDD:463661 5/21 (24%)
EGF_CA 218..249 CDD:429571 17/30 (57%)
EGF_3 267..302 CDD:463759 12/35 (34%)
PHA03247 <306..473 CDD:223021
PRK11633 <353..>409 CDD:236940
MAM 537..677 CDD:99706
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.