DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp and thbs1

DIOPT Version :9

Sequence 1:NP_001137802.1 Gene:Tsp / 33941 FlyBaseID:FBgn0031850 Length:1060 Species:Drosophila melanogaster
Sequence 2:XP_002937245.1 Gene:thbs1 / 100170153 XenbaseID:XB-GENE-486189 Length:1176 Species:Xenopus tropicalis


Alignment Length:1119 Identity:403/1119 - (36%)
Similarity:532/1119 - (47%) Gaps:243/1119 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 TLDISANGATESRNFEIPNINE----TSTIRSLALQFSKNRITLHVDCKASTHHDIDMNLAKLYT 147
            |||:|.:|   .|..::.::.:    |...:::.|....:|..|:|.|....:.::|:.:.|::|
 Frog   133 TLDLSLSG---ERKQQVVSVEDALLATGHWKNITLFVQDDRAQLYVGCDKMENAELDVPIQKIFT 194

  Fly   148 QMDDPVIKL-FRERKYPL--HFDGDMEHSLQRANCQKGNHRRGNRRMLRNK----ITEREKNKKR 205
              :|...|. .|..|..:  :|.|    .||......|.....   :||||    :|........
 Frog   195 --EDLASKAHLRVAKGGVKDNFQG----VLQNVRFVFGTTLEA---ILRNKGCSSMTNSVITLDN 250

  Fly   206 DVRGWYEPTIAREGVVDHRHQEVPTDVERGDIPVLNGDCED--ALARSLSDLLALVKLLREDVAH 268
            .|.| ..|.| |...:.|:.:::..        |....|:|  .|...:..|..||..|::.|..
 Frog   251 PVNG-SSPAI-RTNYIGHKTKDLHA--------VCGISCDDLSKLFAEMKGLRTLVTSLQDQVTK 305

  Fly   269 --QRQEIAYLRMLLENCAGCKNPLTTDNQLRIEPDCRSANPCYPGVECLDSAAGPRCGHCPL--- 328
              :|.|:...|:.:...|...|.:...|  |.|....|...|    .|.:||...|...|||   
 Frog   306 ETERNELIAQRVTMTPGACLHNGVLHKN--RDEWTVDSCTEC----TCQNSATICRKVSCPLMPC 364

  Fly   329 --GFIGDGKSC-------------KP-------GVTCAHHMCYPGVQCHDTVNG----------- 360
              ..|.||:.|             .|       .|||.|.:...|..| |::|.           
 Frog   365 TNATIPDGECCPRCWPSDSADDDWSPWSDWTPCSVTCGHGIQQRGRSC-DSLNNRCEGSSVQTRS 428

  Fly   361 ---AQCD--------------------SCPAGY-------------------EGDGR-------- 375
               .:||                    :|.:|.                   ||:||        
 Frog   429 CHIQECDKRFKQDGGWSHWSPWSSCSVTCGSGQITRIRLCNSPVPQLNGKPCEGEGRENKPCQKD 493

  Fly   376 ---------------TCSL-------------RNP----------------------------CL 384
                           ||::             .||                            ||
 Frog   494 PCPINGQWGPWSLWDTCTVTCGGGMMKRERLCNNPKPQYGGKECIGDPTDSQICNKQDCPIDGCL 558

  Fly   385 DTPCPSGAQCLQVGYPPYFHCISCPMGHEVNGTSCRDMNECL-LYDPCDEL---ATCTNLSPGFQ 445
            ..||.:|.:|... ....:.|.|||.|:..||.:|:|::||. :.|.|..|   ..|.|..||:.
 Frog   559 SNPCFAGVKCTSF-IDGSWKCGSCPPGYRGNGITCKDIDECKEVPDACFSLNGVHRCENTEPGYN 622

  Fly   446 CSPCPVGFDGTHAHGYFADYYSVDYRRQTCLDVDECRTGFFRCPEHSTCINEIGSYRCQCHEGYV 510
            |.|||..|.||...|               ..:||.:.....|...:.|                
 Frog   623 CLPCPPRFTGTQPFG---------------KGIDEAKANKQVCKPRNPC---------------- 656

  Fly   511 TNGTYSCLDRSSVFMCPDGTVCDRNAVCLRMDNI---RHKCHCNVGWAGNGLICGRDTDVDGWPD 572
            .:||:.               |.|||.|:.:.:.   .::|.|..|:||||:|||.|||:||||:
 Frog   657 ADGTHD---------------CHRNARCIYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPN 706

  Fly   573 QAIGC---PELRCQRDNCPKLPNSGQEDADLDGHGDGCDDDADGDNVQNSQDNCWLAYNTEQLDS 634
            :.:.|   ....|.:||||.||||||||.|.||.||.||.|.|.|.:.:.:|||...||..|.|.
 Frog   707 ENLTCVANATYHCMKDNCPNLPNSGQEDYDKDGMGDACDKDDDNDGILDDRDNCQFVYNPAQYDY 771

  Fly   635 DGDKVGDVCDNCVLKYNPRQLDTDEDGLGDECDGDIDNDSIPNALDNCPLLPNPSQSDVDNDGVG 699
            |.|.|||.||||...:||.|.|||.:|.||.|..|||.|.|.|..||||.:.|..|.|.|.||||
 Frog   772 DRDDVGDRCDNCPYNHNPDQADTDRNGEGDACAVDIDGDGILNERDNCPYVYNVDQRDTDKDGVG 836

  Fly   700 DACDNCPNLPNPDQKDRDMDFVGDACHRDIDGDDDGVPNSLDNCPMVSNSDQLDTDGDGTGDECD 764
            |.|||||...||:|.|.|.|.:||.|..:.|.|:||..|:|||||.:.|::|.|.|.||.||.||
 Frog   837 DQCDNCPLEHNPEQTDSDSDLIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACD 901

  Fly   765 DDMDGDGIPNYKDNCPLAKNPKQDDFNRNGKGDSCEDDEDVDGVPNGMDNCPNNSMIHHTDFRTL 829
            .|.|.||:|:.||||.|..||.|.|.|.:|:||:|:.|.|.|.:|:..|.||.|..|..||||..
 Frog   902 HDDDNDGVPDDKDNCRLVPNPDQTDSNGDGRGDACQYDFDDDNIPDAEDVCPENVEISTTDFRKF 966

  Fly   830 QTIPLDPKGLSQADPNWVVHANGTEIVQTLNSDPGLAVGKDAFGGVDFDGTFYINDDTDDDYAGF 894
            |.:||||||.||.||||||...|.|:|||:|.|||:|||.|.|..|||.|||:||.:.|||||||
 Frog   967 QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTERDDDYAGF 1031

  Fly   895 VFSYQSSYKYYVVQWKKGTQTYWEPRPFTASAAPGIQIKLVNSTEGPGPMMRNSLWHEGNTDGEA 959
            ||.||||.::|||.||:.|||||:..|..|....|:.||:||||.|||..:||:|||.|||.|:.
 Frog  1032 VFGYQSSSRFYVVMWKQITQTYWDTTPTVAQGYSGLSIKVVNSTSGPGEHLRNALWHTGNTPGQV 1096

  Fly   960 RLLWKDPKNIAWKERTSYRWSLVHRPAIGLIRLQMHEGNRLIFDSGNVFDSTLKGGRLGVFCFSQ 1024
            |.||.||..|.||:.|:|||.|.|||..|.||:.|:||.:::.|||.::|.|..|||||:|.|||
 Frog  1097 RTLWHDPHQIGWKDFTAYRWHLTHRPKTGFIRVVMYEGKKVMADSGPIYDKTYAGGRLGLFVFSQ 1161

  Fly  1025 RMIIWSNLQYKCNN 1038
            .|:.:|:|:|:|.:
 Frog  1162 EMVFFSDLKYECRD 1175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TspNP_001137802.1 EGF_CA 477..513 CDD:284955 4/35 (11%)
TSP3 repeat_1C 563..595 CDD:275367 17/34 (50%)
TSP3 repeat_short 632..654 CDD:275365 12/21 (57%)
TSP_3 656..690 CDD:280556 18/33 (55%)
TSP3 repeat_long 656..690 CDD:275366 18/33 (55%)
TSP3 repeat_short 691..713 CDD:275366 14/21 (67%)
TSP3 repeat_long 714..751 CDD:275365 17/36 (47%)
TSP_3 715..751 CDD:280556 17/35 (49%)
TSP3 repeat_short 752..787 CDD:275366 20/34 (59%)
TSP_3 789..822 CDD:280556 14/32 (44%)
TSP_C 841..1038 CDD:283408 114/196 (58%)
coiled coil 245..286 CDD:293927 11/44 (25%)
TSPcc_insect 245..286 CDD:293927 11/44 (25%)
EGF_CA 343..377 CDD:214542 14/109 (13%)
EGF_CA 421..457 CDD:238011 16/39 (41%)
thbs1XP_002937245.1 LamG 27..227 CDD:389952 23/102 (23%)
VWC 324..378 CDD:278520 17/59 (29%)
TSP1 388..435 CDD:214559 9/47 (19%)
TSP1 444..496 CDD:214559 6/51 (12%)
TSP1 501..553 CDD:214559 4/51 (8%)
EGF_3 656..695 CDD:372403 15/69 (22%)
TSP3 repeat_1C 697..732 CDD:275367 17/34 (50%)
TSP3 repeat_long 733..768 CDD:275366 17/34 (50%)
TSP3 repeat_short 769..791 CDD:275365 12/21 (57%)
TSP_3 792..827 CDD:367074 18/34 (53%)
TSP3 repeat_long 793..827 CDD:275366 18/33 (55%)
TSP3 repeat_short 828..850 CDD:275366 14/21 (67%)
TSP_3 851..888 CDD:367074 17/36 (47%)
TSP3 repeat_long 851..888 CDD:275365 17/36 (47%)
TSP3 repeat_short 889..924 CDD:275366 20/34 (59%)
TSP_3 925..958 CDD:367074 14/32 (44%)
TSP_C 978..1175 CDD:368586 114/196 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D120983at2759
OrthoFinder 1 1.000 - - FOG0001167
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10199
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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