DRSC/TRiP Functional Genomics Resources

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Protein Alignment cort and CDC20.4

DIOPT Version :9

Sequence 1:NP_001260144.1 Gene:cort / 33937 FlyBaseID:FBgn0000351 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_198042.1 Gene:CDC20.4 / 832748 AraportID:AT5G26900 Length:444 Species:Arabidopsis thaliana


Alignment Length:483 Identity:102/483 - (21%)
Similarity:184/483 - (38%) Gaps:131/483 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 VGERFIPNRFERENIEFNLKYIGKRKERDILETGVTLT---------------ASYWRQSGFISN 101
            |.|.|:|.:..::|::   ::|..|..:|.......||               .:|..|...:.|
plant    11 VPEHFLPRKLSKQNLD---RFIPNRSAKDFDFANYALTQGSKRNLDEVTSASRKAYMTQLAVVMN 72

  Fly   102 INRTFGIGERRLFQFSSQQGTRSRVVDNDSADSDWPCNPRARPYAIQNATH--EMPGICSPVDYN 164
            .|||      |:..|.::..:......:||...: |...:.|.|..||:..  :.||:......|
plant    73 QNRT------RILAFRNKPKSLLSTNHSDSPHQN-PKPVKPRRYIPQNSERVLDAPGLRDDFSLN 130

  Fly   165 MMDWSSGGMVAMSSGQDVMLW----RNLDESTMVFSVESP-TSLKYSPDGKHLAIGCMDRNYPVL 224
            ::||.|..::|::.|..|.||    .:..|...:...:.| ||:.::.||..||:| :|.:  .:
plant   131 LLDWGSANVLAIALGDTVYLWDASSGSTSELVTIDEDKGPVTSINWTQDGLDLAVG-LDNS--EV 192

  Fly   225 DLWEVRSPTEFLVSYRKLFFKSMGY---ISCIEWSHDGKEVICGTQCGVIIVLAMPTLNTLMQLR 286
            .||:       .||.|::.....|:   :..:.|  |...:..|...|.|:       |..:::|
plant   193 QLWD-------CVSNRQVRTLRGGHESRVGSLAW--DNHILTTGGMDGKIV-------NNDVRIR 241

  Fly   287 E--------HRHTVKKMKFAPTHKYFASSDTDGKIFIFDAVL------------------KVRLL 325
            .        |...|..:|::.:....||...|..:.|:|..|                  .||.|
plant   242 SSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHRFEEHTAAVRAL 306

  Fly   326 KL---------------DGRSIVFDWHPWTGEDL-AVAERSPASIFIFNIPRRQFVASYRRRDDR 374
            ..               ||: |.| |:..||..| :|...|.....:::...|:.::|:      
plant   307 AWCPFQASLLATGGGVGDGK-IKF-WNTHTGACLNSVETGSQVCSLLWSQSERELLSSH------ 363

  Fly   375 IVIKTLTYSKITGELLVNVIRRDDADLAVCEILVLASLNRVVDLMSHQDRGTLFLMWNPDGTKIA 439
                ..|.:::|                   :....|::::.:|..|..| .||:..:|:|..:|
plant   364 ----GFTQNQLT-------------------LWKYPSMSKMAELNGHTSR-VLFMAQSPNGCTVA 404

  Fly   440 TGGLDDTFSLWNFF---PTYKREAILRK 464
            :...|:...|||.|   |...::|..:|
plant   405 SAAGDENLRLWNVFGEPPKTTKKAASKK 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cortNP_001260144.1 WD40 <166..453 CDD:225201 70/336 (21%)
WD40 166..451 CDD:295369 68/334 (20%)
WD40 repeat 201..244 CDD:293791 13/42 (31%)
WD40 repeat 251..287 CDD:293791 6/35 (17%)
WD40 repeat 292..326 CDD:293791 10/51 (20%)
WD40 repeat 334..369 CDD:293791 9/35 (26%)
WD40 repeat 377..419 CDD:293791 3/41 (7%)
WD40 repeat 427..466 CDD:293791 13/41 (32%)
CDC20.4NP_198042.1 WD40 <147..422 CDD:225201 66/325 (20%)
WD40 repeat 172..209 CDD:293791 13/46 (28%)
WD40 repeat 214..246 CDD:293791 7/40 (18%)
WD40 repeat 256..296 CDD:293791 7/39 (18%)
WD40 repeat 303..339 CDD:293791 10/37 (27%)
WD40 repeat 347..385 CDD:293791 5/66 (8%)
WD40 repeat 391..415 CDD:293791 6/23 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0305
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19918
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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