DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cort and fzr

DIOPT Version :9

Sequence 1:NP_001260144.1 Gene:cort / 33937 FlyBaseID:FBgn0000351 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_524852.2 Gene:fzr / 45922 FlyBaseID:FBgn0262699 Length:478 Species:Drosophila melanogaster


Alignment Length:551 Identity:121/551 - (21%)
Similarity:198/551 - (35%) Gaps:164/551 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 DKKSLTPFKKVRRKNWKQEAAYKSDTSKGQEVSYVGERFIPNRFERENIEFNLKYIGK------- 75
            :|:.|..:..|.|..:....:..:.||.        :||||.| ...|.:.|...|.|       
  Fly     7 EKRILKHYSPVARNLFNNFESSTTPTSL--------DRFIPCR-AYNNWQTNFASINKSNDNSPQ 62

  Fly    76 --RKERDILETGVTLTA--------------SYWRQSGFISNINRTFGIGERRLFQFSSQQGTRS 124
              :|:||..||.....|              ...:.:|...|.|......:|.||::.|.     
  Fly    63 TSKKQRDCGETARDSLAYSCLLKNELLGSAIDDVKTAGEERNENAYTPAAKRSLFKYQSP----- 122

  Fly   125 RVVDNDSADSDWPCNPRARPYAI--------------QNATHEMPGICSPV--------DY--NM 165
                 ...|.:..|     ||::              :.||.::..|...|        |:  |:
  Fly   123 -----TKQDYNGEC-----PYSLSPVSAKSQKLLRSPRKATRKISRIPFKVLDAPELQDDFYLNL 177

  Fly   166 MDWSSGGMVAMSSGQDVMLWRNLDESTMVFSVESP-----TSLKYSPDGKHLAIGCMDRNYPVLD 225
            :||||..::|:..|..|.||.............||     ||:.::..|..:|:|   .::..:.
  Fly   178 VDWSSQNVLAVGLGSCVYLWSACTSQVTRLCDLSPDANTVTSVSWNERGNTVAVG---THHGYVT 239

  Fly   226 LWEVRSPTEFLVSYRKLFFKSMGY---ISCIEWSHDGKEVICGTQCGVIIV--LAMPTLNTLMQL 285
            :|:|.:        .|...|..|:   :..:.|:.|  .:..|::...||.  ...|.|.:..:|
  Fly   240 VWDVAA--------NKQINKLNGHSARVGALAWNSD--ILSSGSRDRWIIQRDTRTPQLQSERRL 294

  Fly   286 REHRHTVKKMKFAPTHKYFASSDTDGKIFIFD--------------AVLKV--------RLLKLD 328
            ..||..|..:|::|.::|.||...|.::::::              |.:|.        .||...
  Fly   295 AGHRQEVCGLKWSPDNQYLASGGNDNRLYVWNQHSVNPVQSYTEHMAAVKAIAWSPHHHGLLASG 359

  Fly   329 G----RSIVFDWHPWTGEDLAVAERSPASIFIFNIPRRQFVASYRRRDDRIVIKTLTYSKITGEL 389
            |    |.|.| |:..||:.:...                        |....:..|.:||.:.||
  Fly   360 GGTADRCIRF-WNTLTGQPMQCV------------------------DTGSQVCNLAWSKHSSEL 399

  Fly   390 LVNVIRRDDADLAVCEILV--LASLNRVVDLMSHQDRGTLFLMWNPDGTKIATGGLDDTFSLWNF 452
            :      .....:..:|||  ..||.:|..|..|..| .|:|..:|||..|.||..|:|...||.
  Fly   400 V------STHGYSQNQILVWKYPSLTQVAKLTGHSYR-VLYLALSPDGEAIVTGAGDETLRFWNV 457

  Fly   453 FPTYKREAILRKQEQKAKDKCSSLSLYKGIR 483
            |          .:.:..|:..|.|:|:..||
  Fly   458 F----------SKARSQKENKSVLNLFANIR 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cortNP_001260144.1 WD40 <166..453 CDD:225201 76/324 (23%)
WD40 166..451 CDD:295369 74/322 (23%)
WD40 repeat 201..244 CDD:293791 8/42 (19%)
WD40 repeat 251..287 CDD:293791 8/37 (22%)
WD40 repeat 292..326 CDD:293791 10/55 (18%)
WD40 repeat 334..369 CDD:293791 4/34 (12%)
WD40 repeat 377..419 CDD:293791 11/43 (26%)
WD40 repeat 427..466 CDD:293791 13/38 (34%)
fzrNP_524852.2 WD40 <174..469 CDD:225201 79/349 (23%)
WD40 178..456 CDD:238121 74/322 (23%)
WD40 repeat 217..254 CDD:293791 9/47 (19%)
WD40 repeat 260..296 CDD:293791 8/37 (22%)
WD40 repeat 301..337 CDD:293791 7/35 (20%)
WD40 repeat 344..382 CDD:293791 10/62 (16%)
WD40 repeat 387..425 CDD:293791 11/43 (26%)
WD40 repeat 431..457 CDD:293791 11/25 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0305
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19918
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.