DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cort and cdc20

DIOPT Version :9

Sequence 1:NP_001260144.1 Gene:cort / 33937 FlyBaseID:FBgn0000351 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_998245.2 Gene:cdc20 / 406353 ZFINID:ZDB-GENE-040426-2044 Length:496 Species:Danio rerio


Alignment Length:539 Identity:111/539 - (20%)
Similarity:183/539 - (33%) Gaps:180/539 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 SPNKN-------SKLDKKSLTPFKKVRRKNWKQEAAYKSDTSKGQEVSYVGERFIPNRFERENIE 67
            ||||:       ||...|  ||.|..:.:|...:|.              |:|:||.   |.|.:
Zfish    44 SPNKSVNRSVSLSKTPSK--TPGKNGKTQNTPSKAG--------------GDRYIPT---RNNKQ 89

  Fly    68 FNLKYIGKRKERDILETGVTLTA---SYWRQS--GFISNINRTFGIGERRLFQFSSQQGT----- 122
            .::......||.:.:|.....||   ..|..|  |:.....:...:|.:.|:.....|..     
Zfish    90 LDVASFLISKENEPVEESEPSTAPNQKAWSMSLNGYDIEEAKILHLGGKPLYAPEGYQNNLKVLY 154

  Fly   123 ----------RSRVVDNDSADSDWPCNPRARPYAIQNATHEMPGICSPVDYNMMDWSSGGMVAMS 177
                      :||.:.             :.|..|.:|    |.|.:....|:|||....::|:.
Zfish   155 SQVPTPVSVKKSRYIS-------------SYPERILDA----PDIRNDFYLNLMDWGRQNVLAVG 202

  Fly   178 SGQDVMLWRNLDESTMVF------SVESPTSLKYSPDGKHLAIGCMDRNYPVLDLWEVRSPTEFL 236
            ....|.|| :..|..:|.      ..|...|:.:|.||..||||..|..   ::||:|:      
Zfish   203 LANQVYLW-DAGEGDIVLLKKMEDDNEYICSVSWSKDGNFLAIGTSDCK---VELWDVQ------ 257

  Fly   237 VSYRKLFFKSMGY---ISCIEWSHDGKEVICGTQCGVIIVLAMPTLNTLMQLREHRHTVK----- 293
              |:|......|:   :.|:.|  :...:..|::.|:|                |:|.|:     
Zfish   258 --YQKRLRSMDGHSARVGCLSW--NDHILSSGSRSGLI----------------HQHDVRVADHH 302

  Fly   294 ------------KMKFAPTHKYFASSDTDGKIFIFDAVLKVR------LLKLDGRSIVFDWHPWT 340
                        .:.::|..:|.||...|..::|:.......      |.:..|......|.||.
Zfish   303 IFTFGGHTQEVCGLTWSPDGRYLASGGNDNMVYIWPMTTGSENQAIHALSEHQGAVKALAWCPWQ 367

  Fly   341 GEDLA----VAER-------------------SPASIFIFNIPRRQFVASYRRRDDRIVI-KTLT 381
            ...||    .::|                   |..|..:|....::.|:.:....|::|| |..:
Zfish   368 PNILASGGGTSDRHIRIWNASSGSCISSLDTCSQVSSLVFAPNYKELVSGHGFAHDKVVIWKYPS 432

  Fly   382 YSKITGELLVNVIRRDDADLAVCEILVLASLNRVVDLMSHQDRGTLFLMWNPDGTKIATGGLDDT 446
            ::|:|                              :...|:.| .|.|..:|||:.:|:...|:|
Zfish   433 FAKVT------------------------------EHEGHEAR-ILNLALSPDGSTLASIAADET 466

  Fly   447 FSLWNFFPTYKREAILRKQ 465
            ..||..|...|..|...||
Zfish   467 IRLWKCFEKEKDAAKKPKQ 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cortNP_001260144.1 WD40 <166..453 CDD:225201 69/342 (20%)
WD40 166..451 CDD:295369 68/340 (20%)
WD40 repeat 201..244 CDD:293791 14/42 (33%)
WD40 repeat 251..287 CDD:293791 5/35 (14%)
WD40 repeat 292..326 CDD:293791 8/56 (14%)
WD40 repeat 334..369 CDD:293791 10/57 (18%)
WD40 repeat 377..419 CDD:293791 4/42 (10%)
WD40 repeat 427..466 CDD:293791 15/39 (38%)
cdc20NP_998245.2 WD40 <194..484 CDD:225201 69/350 (20%)
WD40 196..471 CDD:238121 65/335 (19%)
WD40 repeat 230..267 CDD:293791 14/47 (30%)
WD40 repeat 273..308 CDD:293791 8/52 (15%)
WD40 repeat 313..352 CDD:293791 6/38 (16%)
WD40 repeat 359..397 CDD:293791 6/37 (16%)
WD40 repeat 402..440 CDD:293791 9/67 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19918
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.