DRSC/TRiP Functional Genomics Resources

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Protein Alignment cort and fzr-1

DIOPT Version :9

Sequence 1:NP_001260144.1 Gene:cort / 33937 FlyBaseID:FBgn0000351 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_001379369.1 Gene:fzr-1 / 174516 WormBaseID:WBGene00001510 Length:704 Species:Caenorhabditis elegans


Alignment Length:480 Identity:97/480 - (20%)
Similarity:155/480 - (32%) Gaps:183/480 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LKYIGKRKERDILETGVTLTASYWRQSGFISNINRTFGIGERRLFQFSSQQGTRSRVVDNDSADS 134
            :||.|:          .|.||:        |.....||:..:||.:                   
 Worm   342 VKYGGQ----------ATTTAT--------SPFGGPFGVDSQRLLR------------------- 369

  Fly   135 DWPCNPR-------ARPYAIQNATHEMPGICSPVDYNMMDWSSGGMVAMSSGQDVMLWR------ 186
                .||       ..||.:.:|    |.:......|::||||...:::.....|.||.      
 Worm   370 ----TPRKPIRKVPKNPYKVLDA----PELQDDFYLNLVDWSSQNQLSVGLAACVYLWSATTSQV 426

  Fly   187 -NLDESTMVFSVESPTSLKYSPDGKHLAIGCMDRNYPVLDLWEV--RSPTEFLVSYRKLFFKSMG 248
             .|.:.......:..||:::...|..||:|   .:..|..:|:|  :..|..|..:       ..
 Worm   427 IKLCDLGQTNEQDQVTSVQWCDKGDLLAVG---TSRGVTQIWDVTTQKKTRELTGH-------SS 481

  Fly   249 YISCIEWSHDGKEVIC-GTQCGVIIVLAMPTLNTLM--QLREHRHTVKKMKFAPTHKYFASSDTD 310
            .:.|:.|:.|   .|| |::...|:...:...:..|  :|..||..|..:|::|..:..||...|
 Worm   482 RVGCLAWNAD---TICSGSRDRTIMHRDIRCDDNDMGRKLTNHRQEVCGLKWSPDKQLLASGGND 543

  Fly   311 GKIFIFDAVLKVRLLKLDGRSIVFDWHPWTGEDLAVAERSPASIFIFNIPRRQFVASYRRRDDRI 375
            .::.:                       |                  |:.|.:.:.:|.:.:  .
 Worm   544 NQLLV-----------------------W------------------NLRRNEPIQTYTQHN--A 565

  Fly   376 VIKTLTYSKITGELLV-------------NVIRRD-----DADLAVCEI--------LV------ 408
            .:|.|.:|.....|||             |.:...     |....||.:        ||      
 Worm   566 AVKALAWSPHHHGLLVSGGGTADRCLRFWNTLTAQPMQCVDTGSQVCNVAWSKHSSELVSTHGYS 630

  Fly   409 ----------LASLNRVVDLMSHQDRGTLFLMWNPDGTKIATGGLDDTFSLWNFF-----PTYKR 458
                      ..||..|..|:.||.| .|:|..:|||..|.||..|:|...|:.|     ||..|
 Worm   631 FNHLQVIIWKYPSLQPVTKLVGHQYR-VLYLAMSPDGESIVTGAGDETLRFWHVFNKGNPPTITR 694

  Fly   459 EAILRKQEQKAKDKCSSLSLYKGIR 483
                           |.|:|:..||
 Worm   695 ---------------SKLNLHSTIR 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cortNP_001260144.1 WD40 <166..453 CDD:225201 70/340 (21%)
WD40 166..451 CDD:295369 69/338 (20%)
WD40 repeat 201..244 CDD:293791 11/44 (25%)
WD40 repeat 251..287 CDD:293791 9/38 (24%)
WD40 repeat 292..326 CDD:293791 6/33 (18%)
WD40 repeat 334..369 CDD:293791 3/34 (9%)
WD40 repeat 377..419 CDD:293791 15/83 (18%)
WD40 repeat 427..466 CDD:293791 15/43 (35%)
fzr-1NP_001379369.1 WD40 400..681 CDD:238121 69/337 (20%)
WD40 repeat 441..478 CDD:293791 11/39 (28%)
WD40 repeat 484..520 CDD:293791 9/38 (24%)
WD40 repeat 525..561 CDD:293791 9/76 (12%)
WD40 repeat 568..606 CDD:293791 7/37 (19%)
WD40 repeat 611..651 CDD:293791 7/39 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0305
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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