DRSC/TRiP Functional Genomics Resources

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Protein Alignment cort and cdc20b

DIOPT Version :10

Sequence 1:NP_523494.1 Gene:cort / 33937 FlyBaseID:FBgn0000351 Length:483 Species:Drosophila melanogaster
Sequence 2:XP_004910413.1 Gene:cdc20b / 100497347 XenbaseID:XB-GENE-1013871 Length:519 Species:Xenopus tropicalis


Alignment Length:323 Identity:72/323 - (22%)
Similarity:130/323 - (40%) Gaps:67/323 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 DY--NMMDWSSGGMVAMSSGQDVMLWRNLDESTMVFSVESPT---------------SLKYSPDG 209
            ||  |::||:|..:||:          .|..:..:||.|:.|               |:.:...|
 Frog   230 DYYLNLLDWNSENLVAI----------GLKSTAYIFSGENRTVTQKIHLSCPATYVSSVSWISSG 284

  Fly   210 KHLAIGCMDRNYPVLDLWEVRSPTEFLVSYRKLFFKSMGYIS---CIEWSHDGKEVICGTQCGVI 271
            ..||||.....   :.||::.:        :|.....:|::|   .:.|::  ..:..|::.|.|
 Frog   285 TCLAIGTSSGE---VQLWDIET--------QKRLRNMLGHMSVVGALSWNN--HILSSGSRLGHI 336

  Fly   272 ----IVLAMPTLNTLMQLREHRHTVKKMKFAPTHKYFASSDTDGKIFIF-----DAVLKVRLLKL 327
                :.:|...:.||    :|:..:..:|::|.....||..:||.:.|:     :..||..||.:
 Frog   337 HHHDVRIAEHHIGTL----QHKQGICSLKWSPCGNKLASGSSDGDLKIWPCDPGETKLKSPLLNM 397

  Fly   328 DGRSIV--FDWHPWTGEDLAV-AERSPASIFIFNIPRRQFVASYRRRDDRIVIKTLTYSKITGEL 389
            ...:.|  .:|.||..:.||| ...:...|.|::....:.:.|......   |.:|.:...|.||
 Frog   398 PHPTAVKAMNWCPWLSDTLAVGGGMTDGLIRIWDTNSGKNIHSANTNSQ---ICSLLWLPQTKEL 459

  Fly   390 LVNVIRRDDADLAVCEILVLASLNRVVDLMSHQDRGTLFLMWNPDGTKIATGGLDDTFSLWNF 452
            |..    .........|....||.::.|...|:.| .|.|..:||..:|.:...:.|.::|.:
 Frog   460 LTG----HGPSRNQMTIWQYPSLLKMNDYYGHKGR-VLHLALSPDQRRIFSAAANGTANIWKY 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cortNP_523494.1 WD40 <168..451 CDD:441893 67/312 (21%)
WD40 repeat 201..244 CDD:293791 10/57 (18%)
WD40 repeat 251..287 CDD:293791 8/42 (19%)
WD40 repeat 292..326 CDD:293791 10/38 (26%)
WD40 repeat 334..369 CDD:293791 9/35 (26%)
WD40 repeat 377..419 CDD:293791 10/41 (24%)
WD40 repeat 427..466 CDD:293791 7/26 (27%)
cdc20bXP_004910413.1 WD40 repeat 234..270 CDD:293791 11/45 (24%)
WD40 <268..515 CDD:441893 58/271 (21%)
WD40 repeat 275..312 CDD:293791 9/47 (19%)
WD40 repeat 318..349 CDD:293791 5/32 (16%)
WD40 repeat 357..396 CDD:293791 10/38 (26%)
WD40 repeat 404..440 CDD:293791 8/35 (23%)
WD40 repeat 447..485 CDD:293791 10/41 (24%)
WD40 repeat 491..517 CDD:293791 7/25 (28%)

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