DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-iota and ncam1a

DIOPT Version :9

Sequence 1:NP_001097100.1 Gene:DIP-iota / 33925 FlyBaseID:FBgn0031837 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_009293555.1 Gene:ncam1a / 30447 ZFINID:ZDB-GENE-990415-31 Length:1010 Species:Danio rerio


Alignment Length:327 Identity:84/327 - (25%)
Similarity:134/327 - (40%) Gaps:64/327 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 NSTVPVGRDALLTCVVHDLVSFKVAWLRVDTQTILSIQNHVITKNHRISISHTEHRIWQLKIRDV 103
            |:|..:.:...|.|.........|.|.|.:|:         :..:.:.|::....   :|.|:||
Zfish   219 NATADINQAVTLACHADGYPEPTVKWARGNTE---------LESDEKYSLNEDGS---ELTIKDV 271

  Fly   104 QESDRGWYMC-QINTDPMKSQMGYLDVVVPPDI--VDYQTSQDVVRSTGQNVTLTCSATGVPMPT 165
            .:.|.|.|.| ..|....:|:...|:|.|.|.|  ::.||:.::    .:.:||||.|||.|.|.
Zfish   272 NKLDEGDYKCIARNKAGERSEEVTLNVFVQPKITFLENQTASEL----EEQITLTCEATGDPTPN 332

  Fly   166 I---------------TWRREEATPILISDDGDREVFS-VEGQNLTLWQVQRSHMGAYLCIASNG 214
            |               :|.|.|....|   ||:..|.| ....:|||..||.:..|.|||.|.|.
Zfish   333 IIWSFGRRVFTENEQASWTRPEKHKSL---DGNVVVRSDARVSSLTLKYVQFTDAGQYLCTARNS 394

  Fly   215 VPPTVSKRVMLVVNFAPTIWTRYDTIYVGLGQKLTLECITESQPASVNFWLRDSQLLQGGSYESV 279
            :...: :.:.|.|.:||.| .....::...|....:.|...:.|.:...|.||.|.|...:..:|
Zfish   395 IGQDI-QSMYLEVRYAPKI-QGPQAVFTWEGNPANITCEALAHPGASVLWFRDGQQLPSANTTNV 457

  Fly   280 SVDHVFRIVMRITLRPITKRDFGEYICRAKNAMGQTDRIITVHHKAKKHGQHSHQTSSRESQFIV 344
            .:.:. ..|..:.:.|.::.|||.|.|.|.|.:|                     |.|:|  ||:
Zfish   458 KIYNT-PTVSFLEVTPDSQNDFGSYNCTATNVIG---------------------TESKE--FIL 498

  Fly   345 IE 346
            ::
Zfish   499 VQ 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-iotaNP_001097100.1 IG_like 39..125 CDD:214653 19/86 (22%)
Ig 39..122 CDD:299845 18/83 (22%)
Ig 132..213 CDD:299845 32/98 (33%)
IG_like 141..227 CDD:214653 30/101 (30%)
IG_like 239..322 CDD:214653 19/82 (23%)
IGc2 245..313 CDD:197706 18/67 (27%)
ncam1aXP_009293555.1 Ig 20..112 CDD:299845
I-set 21..111 CDD:254352
IG_like 121..200 CDD:214653
IGc2 128..189 CDD:197706
Ig 208..301 CDD:299845 21/93 (23%)
IG_like 219..298 CDD:214653 20/90 (22%)
Ig 300..406 CDD:299845 35/113 (31%)
IG_like 308..406 CDD:214653 32/105 (30%)
ig 413..498 CDD:278476 23/108 (21%)
IG_like 415..498 CDD:214653 23/106 (22%)
fn3 505..589 CDD:278470
FN3 624..715 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.