DRSC/TRiP Functional Genomics Resources

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Protein Alignment DIP-iota and Lsamp

DIOPT Version :9

Sequence 1:NP_001097100.1 Gene:DIP-iota / 33925 FlyBaseID:FBgn0031837 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_030104997.1 Gene:Lsamp / 268890 MGIID:1261760 Length:392 Species:Mus musculus


Alignment Length:436 Identity:118/436 - (27%)
Similarity:170/436 - (38%) Gaps:118/436 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LPSFWLL-------LLQSVCFSQASFSELNNSDPKFSG---------------PI---------N 38
            |.|.|:|       .||.:.|.....:|:|.|.....|               |:         :
Mouse     6 LHSVWVLGFFLSLFSLQVLAFWNQPPAEVNLSPITIPGTEETMRKKAKEEEGLPVRSVDFNRGTD 70

  Fly    39 NSTVPVGRDALLTCVVHDLVSFKVAWLRVDTQTILSIQNHVITKNH-------RISISHTEHRIW 96
            |.||..|..|:|.|||.|..| |||||.         ::.:|...|       |:.:.......:
Mouse    71 NITVRQGDTAILRCVVEDKNS-KVAWLN---------RSGIIFAGHDKWSLDPRVELEKRHALEY 125

  Fly    97 QLKIRDVQESDRGWYMCQINT--DPMKSQMGYLDVVVPPDIVDYQTSQDVVRSTGQNVTLTCSAT 159
            .|:|:.|...|.|.|.|.:.|  :|..||: ||.|.|||.|.:  .|.||..:.|.||||.|.|.
Mouse   126 SLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKISN--ISSDVTVNEGSNVTLVCMAN 187

  Fly   160 GVPMPTITWRREEATPILISDDGDREVFSVEGQNLTLWQVQRSHMGAYLCIASNGVPPTVSKRVM 224
            |.|.|.||||  ..||:....:|:.|...:.|       :.|...|.|.|.|:|.|.....|:|.
Mouse   188 GRPEPVITWR--HLTPLGREFEGEEEYLEILG-------ITREQSGKYECKAANEVSSADVKQVK 243

  Fly   225 LVVNFAPTIWTRYDTIYVGLGQKLTLECITESQPASVNFWLRDSQLLQGG------SYESVSVDH 283
            :.||:.||| |...:.....|::.:|:|...:.||....|.||...:...      |.|..|   
Mouse   244 VTVNYPPTI-TESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRINSANGLEIKSTEGQS--- 304

  Fly   284 VFRIVMRITLRPITKRDFGEYICRAKNAMGQTD-------RII------------TVHHKAKKHG 329
                  .:|:..:|:..:|.|.|.|.|.:|.|:       |::            |||.|.|..|
Mouse   305 ------SLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPTVPHPIQEIGTTVHFKPKGPG 363

  Fly   330 QHSHQTSSRESQFIVIEEYIANMSDKSCSFQPLWIM---FLCFVNK 372
            .                  :..::.......|||::   ..|.::|
Mouse   364 S------------------VRGINGSVSLAVPLWLLAASLFCLLSK 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-iotaNP_001097100.1 IG_like 39..125 CDD:214653 30/94 (32%)
Ig 39..122 CDD:299845 28/91 (31%)
Ig 132..213 CDD:299845 30/80 (38%)
IG_like 141..227 CDD:214653 31/85 (36%)
IG_like 239..322 CDD:214653 22/107 (21%)
IGc2 245..313 CDD:197706 18/73 (25%)
LsampXP_030104997.1 Ig 69..159 CDD:386229 32/100 (32%)
Ig_3 163..232 CDD:372822 29/79 (37%)
Ig_3 250..325 CDD:372822 21/84 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833581
Domainoid 1 1.000 45 1.000 Domainoid score I12107
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 142 1.000 Inparanoid score I4449
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D265311at33208
OrthoFinder 1 1.000 - - FOG0000150
OrthoInspector 1 1.000 - - mtm8732
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X97
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.900

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