DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-iota and Dscam

DIOPT Version :9

Sequence 1:NP_001097100.1 Gene:DIP-iota / 33925 FlyBaseID:FBgn0031837 Length:376 Species:Drosophila melanogaster
Sequence 2:XP_006522949.1 Gene:Dscam / 13508 MGIID:1196281 Length:2034 Species:Mus musculus


Alignment Length:401 Identity:89/401 - (22%)
Similarity:140/401 - (34%) Gaps:124/401 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 SELNNSDPKFSGPINNSTVPVGRDALLTCVVHDLVSFKVAWLRVDTQTILSIQNHVITKNHR-IS 87
            :.:|...|....|:.|.|...|||..:.|.|.....:.:.|.:         ..:::..||| ::
Mouse   497 ARINVRGPASIRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYK---------NANLLPFNHRQVA 552

  Fly    88 ISHTEHRIWQLKIRDVQ-ESDRGWYMCQINTDPM--KSQMGYLDVVVPP---------------- 133
            ..:.    ..||:.||| |.|.|.|.|.:...|.  .||..::.|.|||                
Mouse   553 FENN----GTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRV 613

  Fly   134 --------------------------------DIVDYQT-------------------------- 140
                                            |.:|:.:                          
Mouse   614 FIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNIDFTSSLRISNLSLMHNGNYTCIARNEAAAV 678

  Fly   141 ---SQDVVRST--------------GQNVTLTCSATGVPMPTITWRREEAT------PILISDDG 182
               ||.:||..              |:.|.|.|||.|.|:|||.|:..:..      ||.:  :|
Mouse   679 EHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIAL--NG 741

  Fly   183 DREVFSVEGQNLTLWQVQRSHMGAYLCIASNGVPPTVSKRVMLVVNFAPTIWTRY-DTIYVGLGQ 246
            ..:|.|  ..:|.:..|.....|.|||..||.|...|||.:.|.|.. |.:.|.| :|.....||
Mouse   742 RIQVLS--NGSLLIKHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKI-PAMITSYPNTTLATQGQ 803

  Fly   247 KLTLECITESQPASVNFWLRDSQLL--QGGSYESVSVDHV-FRIVMRITLRPITKRDFGEYICRA 308
            :..:.|....:...:..|.::.:::  :...| .||...| ..::..:.:.|..:.|.|.:.|.|
Mouse   804 RKEMSCTAHGEKPIIVRWEKEDRIINPEMARY-LVSTKEVGEEVISTLQILPTVREDSGFFSCHA 867

  Fly   309 KNAMGQTDRII 319
            .|:.|:...||
Mouse   868 INSYGEDRGII 878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-iotaNP_001097100.1 IG_like 39..125 CDD:214653 24/89 (27%)
Ig 39..122 CDD:299845 22/86 (26%)
Ig 132..213 CDD:299845 31/177 (18%)
IG_like 141..227 CDD:214653 34/105 (32%)
IG_like 239..322 CDD:214653 18/84 (21%)
IGc2 245..313 CDD:197706 14/70 (20%)
DscamXP_006522949.1 Ig 15..115 CDD:386229
IGc2 239..300 CDD:197706
IG 320..400 CDD:214652
Ig_3 410..488 CDD:372822
IGc2 518..575 CDD:197706 18/69 (26%)
Ig 596..686 CDD:386229 6/89 (7%)
Ig_DSCAM 707..784 CDD:143211 29/80 (36%)
Ig 802..889 CDD:386229 17/78 (22%)
FN3 885..978 CDD:238020
FN3 986..1083 CDD:238020
FN3 1091..1184 CDD:238020
FN3 1189..1278 CDD:238020
Ig_3 1301..1363 CDD:372822
FN3 1380..1470 CDD:238020
FN3 1486..1555 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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