DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DIP-iota and ncam2

DIOPT Version :9

Sequence 1:NP_001097100.1 Gene:DIP-iota / 33925 FlyBaseID:FBgn0031837 Length:376 Species:Drosophila melanogaster
Sequence 2:NP_571905.1 Gene:ncam2 / 114441 ZFINID:ZDB-GENE-010822-1 Length:795 Species:Danio rerio


Alignment Length:385 Identity:89/385 - (23%)
Similarity:140/385 - (36%) Gaps:108/385 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 NSDPKFSGPIN--NSTVPVGRDALLTCVVHDLVSFKVAWLRVDTQTILSIQNHVITKNHR--ISI 88
            |..|..|.|..  |:|...|.....||..:......|.|                   ||  :.:
Zfish   204 NVPPVVSVPQQSFNATADYGESVTFTCRAYGSPEPDVTW-------------------HRKGVQL 249

  Fly    89 SHTEHRIWQ-----LKIRDVQESDRGWYMCQINTDPMKSQMG------YLDVVVPPDIVDYQTSQ 142
            ..:|..:.:     |.:|::|:.|.|.|.|:.:     ::.|      :|.|.|.|.|...   :
Zfish   250 QESERYVMRARGTTLTVRNIQQDDGGSYTCRAS-----NKAGEVEHELFLKVFVQPHITKL---R 306

  Fly   143 DVVRSTGQNVTLTCSATGVPMPTITWRREEATPILISD-----DGDR------EVFSVEGQN-LT 195
            :|....|....::|.|.|.|:|.|:|||       .||     |||:      ||....|:: ||
Zfish   307 NVTAVEGSAAMISCKAEGEPLPEISWRR-------ASDGHSFSDGDKSPDGRVEVRGRYGESMLT 364

  Fly   196 LWQVQRSHMGAYLCIASNGVPPTVSKRVMLVVNFAPTIWTRYDTIYVGLGQKLTLECITESQPAS 260
            :..|:.|..|.:.|.|.:.:... .|.:.|.:.:||.....:...:...|..:.:.|...|.|.:
Zfish   365 IVVVKLSDWGRFDCEALSRIGGH-QKSMFLDIEYAPKFQANHTIFFSWEGNPVNISCDVMSNPPA 428

  Fly   261 VNFWLRDSQLLQGGSYESVSVDHVF----RIVMRITLRPITKRDFGEYICRAKNAMG-------- 313
            ...|.|:...:..   |......|:    |.::.:|  |::.||||.|.|.|:|.:|        
Zfish   429 TMLWRREKLTIPS---EGAGNMRVYTAPGRSLLEVT--PMSDRDFGRYNCTARNNIGMRFQEFIL 488

  Fly   314 -QTD---------------RIITV-HHKAKKHGQHSHQTSSRESQFIVIEEYIANMSDKS 356
             |.|               |:.|| ..|...||.            :.|..|:....|.|
Zfish   489 AQADVPSNPYSVRLSSVAQRVATVTFTKPDSHGG------------VPISHYLVKYKDIS 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DIP-iotaNP_001097100.1 IG_like 39..125 CDD:214653 17/92 (18%)
Ig 39..122 CDD:299845 17/89 (19%)
Ig 132..213 CDD:299845 28/92 (30%)
IG_like 141..227 CDD:214653 28/97 (29%)
IG_like 239..322 CDD:214653 25/111 (23%)
IGc2 245..313 CDD:197706 19/71 (27%)
ncam2NP_571905.1 Ig1_NCAM-2 20..111 CDD:143274
I-set 21..110 CDD:254352
IGc2 127..187 CDD:197706
Ig 213..299 CDD:299845 20/109 (18%)
I-set 213..296 CDD:254352 19/106 (18%)
Ig 298..395 CDD:299845 31/107 (29%)
I-set 300..393 CDD:254352 29/103 (28%)
IG_like 411..488 CDD:214653 20/81 (25%)
IGc2 412..480 CDD:197706 19/72 (26%)
FN3 494..586 CDD:238020 10/55 (18%)
fn3 <616..675 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.