DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11050 and Hddc2

DIOPT Version :10

Sequence 1:NP_609052.1 Gene:CG11050 / 33924 FlyBaseID:FBgn0031836 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_001101930.1 Gene:Hddc2 / 361462 RGDID:1307562 Length:199 Species:Rattus norvegicus


Alignment Length:199 Identity:42/199 - (21%)
Similarity:63/199 - (31%) Gaps:54/199 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 DADRKK------RTYPASSKDLPKHVPYLLVGGGTASIAAFRAIRVHDPKAKVMMITNELEMPYM 253
            |.:||.      ..:..|...:||.| .:.:....:|::.||        ..|..:..|:|...:
  Rat   317 DKERKSPFNGNHAAFSQSQAPIPKSV-LISIPISKSSVSRFR--------NSVEGLNQEIERIII 372

  Fly   254 RPPLSKELWFNPTEA-------EPLKFRQ------------WNGSERSIFYEPNDYYIDPSKLSD 299
            |....:|....|.|.       .||..|.            .|.|.||....|....:.....||
  Rat   373 RDTGDREEQLIPQEVPDGHRAPPPLCQRSIDTQTPLGTATGSNSSSRSQSISPTFLSVPSESCSD 437

  Fly   300 APNGGVAVARGYEVHRLDVVNRKAILTDGTEISYDKC----LIATGARPKNLPIFESAPRAVRER 360
            :|:                .:....|.||.|.....|    ..|:..:|.|..:|:..|....||
  Rat   438 SPS----------------PHEDETLADGREKDLALCSPLPKYASSPKPNNSFMFKREPPEGCER 486

  Fly   361 VTLF 364
            |.:|
  Rat   487 VKVF 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11050NP_609052.1 HD_3 187..344 CDD:432939 34/177 (19%)
Hddc2NP_001101930.1 HD_3 19..175 CDD:432939
Blue background indicates that the domain is not in the aligned region.

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