DRSC/TRiP Functional Genomics Resources

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Protein Alignment COX5B and AT1G80230

DIOPT Version :9

Sequence 1:NP_001285678.1 Gene:COX5B / 33918 FlyBaseID:FBgn0031830 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_178140.1 Gene:AT1G80230 / 844363 AraportID:AT1G80230 Length:171 Species:Arabidopsis thaliana


Alignment Length:124 Identity:45/124 - (36%)
Similarity:58/124 - (46%) Gaps:27/124 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ASICGRMALRAAARQNVAYTPVRFCKMMNDPLEHATGIEKRELLLKAAGN--------DNPFDMK 58
            :||..|:...|||.     |.|:  |.:.|.:..|||.||.||..:..|.        :.||   
plant    47 SSIFSRLIGSAAAD-----TAVK--KRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPF--- 101

  Fly    59 VFKRGAGTKENPNLIPSAFDARIVGCIC--EEDQTYVQWMWLQKGNQKRCE-CGHWFKL 114
                  ||||.|.::.|.:|.|||||..  .||:..|.|.||:||....|. |..:|||
plant   102 ------GTKEAPAVVKSYYDMRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFKL 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COX5BNP_001285678.1 Cyt_c_Oxidase_Vb 25..120 CDD:238464 37/101 (37%)
AT1G80230NP_178140.1 PLN02294 1..157 CDD:177931 45/124 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 52 1.000 Domainoid score I4262
eggNOG 1 0.900 - - E1_KOG3352
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 55 1.000 Inparanoid score I2598
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528134at2759
OrthoFinder 1 1.000 - - FOG0001825
OrthoInspector 1 1.000 - - oto3624
orthoMCL 1 0.900 - - OOG6_102678
Panther 1 1.100 - - O PTHR10122
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1350
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.830

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