DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9547 and Gcdh

DIOPT Version :9

Sequence 1:NP_609040.1 Gene:CG9547 / 33911 FlyBaseID:FBgn0031824 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001102366.1 Gene:Gcdh / 364975 RGDID:1308829 Length:447 Species:Rattus norvegicus


Alignment Length:397 Identity:272/397 - (68%)
Similarity:325/397 - (81%) Gaps:2/397 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SSKAAAPKFNWQDPLNLESQLTEEEVAIRDAFRGYCQAELQPRVKMANRLETFDKKIMEEIGSLG 85
            |.|::.|.|:|:|||.||.|||.:|..|||.||.|||..|..|:.:|||.|.|.:.|:.|:|.||
  Rat    49 SVKSSRPVFDWKDPLVLEEQLTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELG 113

  Fly    86 VLGCTIKGYGCAGVSSVAYGLLTREVERVDSAYRSAVSVQSSLAMGAIYDFGSEEQKQRYLPSMA 150
            |||.|||||||||||||||||||||:|||||.|||.:||||||.|..||.:|||||:|:|||.:|
  Rat   114 VLGPTIKGYGCAGVSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLA 178

  Fly   151 EGKLIGAFGLTEPNHGSDPAGMETRAKYDSKSKTYILNGSKTWITSAPIADVIVVWAKCEDGKVR 215
            :|:|:|.||||||||||||..|||||:::..:|:|.|:|:|||||::|:||:.||||:|||..:|
  Rat   179 KGELLGCFGLTEPNHGSDPGSMETRARHNPSNKSYTLSGTKTWITNSPVADLFVVWARCEDNCIR 243

  Fly   216 GFLVDRKISGKGLETPKIEGKFSLRASPTGMILMDEVRVPEEQLLPNVAGFSGPFSCLNNARYGI 280
            |||:::.:  :||..|:||||||||||.||||:||.|.||||.:||||:..:|||.|||.|||||
  Rat   244 GFLLEKGM--RGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVSSLAGPFGCLNTARYGI 306

  Fly   281 AWGALGAAETCVEIARQYTLDRKQFGRPLAANQLIQKKLADAITEIALGLQACLHVGRLKDQKLH 345
            .||.|||||.|:..||||.|||.|||.|||.|||:||||||.:|||.|||.|||.:||||||...
  Rat   307 TWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKA 371

  Fly   346 TPDMISLLKRNNTGKSLDIARQMRDMLGANGISDEYHVIRHVINLESVNTYEGTHDIHALILGRA 410
            ||:|:|||||||.||:||||||.||:||.||||||||||||.:|||:||||||||||||||||||
  Rat   372 TPEMVSLLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRA 436

  Fly   411 ITGLAAF 417
            |||:.||
  Rat   437 ITGIQAF 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9547NP_609040.1 GCD 29..417 CDD:173840 267/387 (69%)
CaiA 41..417 CDD:224871 259/375 (69%)
GcdhNP_001102366.1 GCD 57..443 CDD:173840 267/387 (69%)
CaiA 69..443 CDD:224871 259/375 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337292
Domainoid 1 1.000 225 1.000 Domainoid score I2458
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H130
Inparanoid 1 1.050 563 1.000 Inparanoid score I1044
OMA 1 1.010 - - QHG61728
OrthoDB 1 1.010 - - D275334at33208
OrthoFinder 1 1.000 - - FOG0005817
OrthoInspector 1 1.000 - - oto95825
orthoMCL 1 0.900 - - OOG6_101810
Panther 1 1.100 - - LDO PTHR42807
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4208
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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