back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG9547 and Ivd

DIOPT Version :9

Sequence 1:	NP_609040.1	Gene:	CG9547 / 33911	FlyBaseID:	FBgn0031824	Length:	419	Species:	Drosophila melanogaster
Sequence 2:	NP_036724.1	Gene:	Ivd / 24513	RGDID:	2936	Length:	424	Species:	Rattus norvegicus

Alignment Length:	426	Identity:	126/426 - (29%)
Similarity:	202/426 - (47%)	Gaps:	47/426 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly     9 KLRPCARRLASTSSKAAAPKFNWQDPLNLESQLTEEEVAIRDAFRGYCQAELQPRVKMANRLETF 73
            :|||....||  ..:.|.......|.:|   .|.||:..:|.....:.|..|.|:.:..::...|
  Rat    16 RLRPLPSPLA--VPQRAHSMLPVDDDIN---GLNEEQKQLRHTISKFVQENLAPKAQEIDQSNDF 75

  Fly    74 D--KKIMEEIGSLGVLGCTIK-GYGCAGVSSVAYGLLTREVERVDSAYRSAVSVQSSLAMGAIYD 135
            .  ::..:::|||||||.|.. .||.:|:..:.:.|:..|:.|..:|...:....|:|.:..|..
  Rat    76 KNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVR 140

  Fly   136 FGSEEQKQRYLPSMAEGKLIGAFGLTEPNHGSDPAGMETRAKYDSKSKTYILNGSKTWITSAPIA 200
            .|:|.||::|||.:..|:.|||..::|||.|||...|  |.|.:.|...|:|||:|.|||:.|.|
  Rat   141 NGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSM--RLKAEKKGDHYVLNGNKFWITNGPDA 203

  Fly   201 DVIVVWAKCEDGKV---RG---FLVDRKISGKGLETPKIEGKFSLRASPTGMILMDEVRVPEEQL 259
            ||:||:||.:...|   ||   |:|::.:  .|..|.|...|..:|.|.|..::.::.:||...:
  Rat   204 DVLVVYAKTDLTAVPASRGITAFIVEKDM--PGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANI 266

  Fly   260 LPNVA-GFSGPFSCLNNARYGIAWGALGAAETCVEIARQYTLDRKQFGRPLAANQLIQKKLADAI 323
            |...: |.....|.|:..|..:|.|.||..:..::....|...|:.||:.:...||:|.|:||..
  Rat   267 LSQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGKMADMY 331

  Fly   324 TEIALGLQACLHVGRLKDQK-----------LHTPDMISLLKRNNTGKSLDIARQMRDMLGANGI 377
            |.:....|...:|.|..|:.           |:|.:.           :..:|......||.||.
  Rat   332 TRLMACRQYVYNVARACDEGHITAKDCAGVILYTAEC-----------ATQVALDGIQCLGGNGY 385

  Fly   378 SDEYHVIRHVINLESVNTYE---GTHDIHALILGRA 410
            .:::.:.|.   |.....||   ||.::..|::|||
  Rat   386 INDFPMGRF---LRDAKLYEIGGGTSEVRRLVIGRA 418

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.