DRSC/TRiP Functional Genomics Resources

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Protein Alignment epsilonCOP and AT2G34840

DIOPT Version :9

Sequence 1:NP_609037.1 Gene:epsilonCOP / 33908 FlyBaseID:FBgn0027496 Length:306 Species:Drosophila melanogaster
Sequence 2:NP_181030.1 Gene:AT2G34840 / 818049 AraportID:AT2G34840 Length:293 Species:Arabidopsis thaliana


Alignment Length:286 Identity:94/286 - (32%)
Similarity:157/286 - (54%) Gaps:18/286 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LFDARNEYYIGNFMGSIN-----FVLPEQGTAGPELLSYMYLSYLAIDSGRIVASDIKEGNSTPL 73
            ||:.||.:|:|.:..:||     .:.||...   |....::.||:|:.|.::|.|:|.|..:|||
plant    11 LFNLRNNFYLGAYQTAINNSEIANLSPENAV---ERDCLVFRSYIALGSYQLVISEIDESAATPL 72

  Fly    74 QALRLVHEAFEQPSRTE----ELLEKLTDKVAGEEDETNIWHLATAIVYCHDGQFENALKILHGS 134
            ||::|:......|...|    .|.|.|.|...|..|..   .|...|::.|:..:...||..|..
plant    73 QAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTL---RLIAGIIFMHEEDYNETLKHTHAG 134

  Fly   135 TNLESMALSVQCLLRLQRVDLAKQLVAKMQEISDDATLTQLAQAWVALAQGTEQMQDAFHIYQEF 199
            ..::..||:||..:::.|.:.|::.:..||:|.:|.||||||.||:.||.|..::|:|:.|:::|
plant   135 GTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDF 199

  Fly   200 CEKFKPTPALLNGQAVVHLGLERYEEADSVLRESLLKKHNDYDTLINLMVHAHLTGKPTEAITRN 264
            .||:..|..:|||:||..:.:..::||:::|.|:|.|...|.:||.||:|.:...||.:   :|:
plant   200 SEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKSS---SRH 261

  Fly   265 LEQLRQFYPKSDFVTDLDKKSAEFDR 290
            |.||:..:|:...|..:......|:|
plant   262 LSQLKLSHPEHILVKRVSSAEDNFER 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
epsilonCOPNP_609037.1 Coatomer_E 12..296 CDD:252768 94/286 (33%)
TPR repeat 175..201 CDD:276809 11/25 (44%)
TPR repeat 206..236 CDD:276809 11/29 (38%)
AT2G34840NP_181030.1 Coatomer_E 9..293 CDD:252768 94/286 (33%)
TPR repeat 176..201 CDD:276809 10/24 (42%)
TPR repeat 206..236 CDD:276809 11/29 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 151 1.000 Domainoid score I1391
eggNOG 1 0.900 - - E1_KOG3081
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5254
Inparanoid 1 1.050 151 1.000 Inparanoid score I1705
OMA 1 1.010 - - QHG54590
OrthoDB 1 1.010 - - D1161199at2759
OrthoFinder 1 1.000 - - FOG0004888
OrthoInspector 1 1.000 - - otm3152
orthoMCL 1 0.900 - - OOG6_102500
Panther 1 1.100 - - LDO PTHR10805
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4002
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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