DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and AT1G30690

DIOPT Version :9

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_001031119.1 Gene:AT1G30690 / 839949 AraportID:AT1G30690 Length:540 Species:Arabidopsis thaliana


Alignment Length:562 Identity:123/562 - (21%)
Similarity:226/562 - (40%) Gaps:135/562 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PFELVMKAYERRFPTCPQMPIVLDCEVIKDESLEDGAKRNTS--RRCKLAVDAPYIFKKLIGVDH 77
            |.|..:||            :|.:.:|.:|||..:|.:::.|  .......|.....||.:. |.
plant    24 PEETTVKA------------VVEETKVEEDESKPEGVEKSASFKEESDFFADLKESEKKALS-DL 75

  Fly    78 VYFLQHNFLDLANRTLSIEAVNESFSSRIEIFERCRYYAHPDNSEWTCFDQSATLDIKNFFGFEH 142
            ...|:...:|   .||......||...:.:..|..:..|..:..:....::....:.|:    |.
plant    76 KSKLEEAIVD---NTLLKTKKKESSPMKEKKEEVVKPEAEVEKKKEEAAEEKVEEEKKS----EA 133

  Fly   143 SMEKMGMKQYTQTTLKGKEIIEFFIGQLREEGITHVERWTSPSDATKSPTLD-----------QA 196
            .:.:...|..|...:..:|||.      :||..|.||:....:...:..|.|           :.
plant   134 VVTEEAPKAETVEAVVTEEIIP------KEEVTTVVEKVEEETKEEEKKTEDVVTEEVKAETIEV 192

  Fly   197 SDQQHSILLDGDFIARSLGQLSPMQESKLLELRKMLDGVDDLERVPSYQTILRFLAARDWHVSQA 261
            .|:..|:  |.|.....:    |:..||         |.:..:.:     :|:||.|||:.|::|
plant   193 EDEDESV--DKDIELWGV----PLLPSK---------GAESTDVI-----LLKFLRARDFKVNEA 237

  Fly   262 YAMLCDSLRWRREHRIDALLA-EYSKPAVVVEHFPGGWHHLDKDGRPVYILRLGHMDVKGLLKSL 325
            :.||..:|:||::::||::|. |:.:......:..|    :|::..||..    ::..:.|.:::
plant   238 FEMLKKTLKWRKQNKIDSILGEEFGEDLATAAYMNG----VDRESHPVCY----NVHSEELYQTI 294

  Fly   326 G----MDGLLRLALHICEEGIQKINESAERLEKPVLNWSLLV--DLE---GLSMRHLWRPGIKAL 381
            |    .:..||....:.|:||||:|      .||....|||.  ||:   |:|...:| .|||  
plant   295 GSEKNREKFLRWRFQLMEKGIQKLN------LKPGGVTSLLQIHDLKNAPGVSRTEIW-VGIK-- 350

  Fly   382 LNIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLD 446
             .:|||::.||||.:.|.:.:..|..|.....::|.|:.:.|:|||:...|  |.:::.|.:|:.
plant   351 -KVIETLQDNYPEFVSRNIFINVPFWFYAMRAVLSPFLTQRTKSKFVVARP--AKVRETLLKYIP 412

  Fly   447 EEIVPDFLGGPCKTMIHEGGLVPKTLYKMNSLEDHDDEVTAELPTTAAAQALVPGKRLSANQQHD 511
            .:.:|...||                :|.....:..:|..:|                       
plant   413 ADELPVQYGG----------------FKTVDDTEFSNETVSE----------------------- 438

  Fly   512 HRNLYKSVDLKAGFAHELLIRNEDPKSVLTWDFDVMRNDLHF 553
                   |.:|.|.:..:.|...:.:..|.||..|:..::::
plant   439 -------VVVKPGSSETIEIPAPETEGTLVWDIAVLGWEVNY 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:282550 29/157 (18%)
CRAL_TRIO_N 222..268 CDD:215024 13/45 (29%)
CRAL_TRIO 293..456 CDD:279044 48/171 (28%)
AT1G30690NP_001031119.1 CRAL_TRIO_N <219..244 CDD:215024 10/29 (34%)
SEC14 273..422 CDD:214706 48/168 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 71 1.000 Inparanoid score I2453
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.860

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