DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and SFH12

DIOPT Version :9

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_568006.1 Gene:SFH12 / 829801 AraportID:AT4G36490 Length:543 Species:Arabidopsis thaliana


Alignment Length:484 Identity:115/484 - (23%)
Similarity:206/484 - (42%) Gaps:116/484 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 ARSLGQLSPMQESKLLELRKMLDGVDDL--ERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRR 273
            |..|..:...::|.:|         |:|  |:...|..:||||.||.:.:.:...|..:.||||:
plant    50 AEELKAVDAFRQSLIL---------DELLPEKHDDYHMMLRFLKARKFDLEKTKQMWTEMLRWRK 105

  Fly   274 EHRIDALLAEYSKPAV--VVEHFPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALH 336
            |...|.::.|:....:  |::::|.|.|.:||:||||||.|||.:|...|::...||..:.  .|
plant   106 EFGADTVMEEFDFKEIDEVLKYYPQGHHGVDKEGRPVYIERLGLVDSTKLMQVTTMDRYVN--YH 168

  Fly   337 ICE-EGIQKINESAERL--EKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVER----NYPE 394
            :.| |....:...|..:  :|.:...:.::|::|:.:::.    .||..::|..:::    ||||
plant   169 VMEFERTFNVKFPACSIAAKKHIDQSTTILDVQGVGLKNF----NKAARDLITRLQKVDGDNYPE 229

  Fly   395 TMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIVPDFLGGPCK 459
            |:.|:.::.|...|.:.|..|.:|:|..|.:|....|   ...:..|.:.:||..:|:||||.| 
plant   230 TLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLG---NKYQSKLLEIIDESELPEFLGGSC- 290

  Fly   460 TMIHEGGLV---------PKTLYKMNSLEDH------------------DDEVTAELPTTAAAQA 497
            |....||.:         |:.:.:::: .||                  :|:.|.| |.:...:|
plant   291 TCADNGGCMRSDKGPWKNPEIMKRVHN-GDHKCSKGSQAENSGEKTIPEEDDSTTE-PASEEEKA 353

  Fly   498 -----LVPGKRLSANQQHDHRNLYKSVDLKAGFAHELLIRN---EDPKS-----VLTWDFDVMRN 549
                 :||....:.|....|:   .|:..|..:|.:....|   |..:|     |:.....|:  
plant   354 SKEVEIVPAAHPAWNMPEAHK---FSLSKKEVYAIQEACNNATTEGGRSPIFTGVMALVMGVV-- 413

  Fly   550 DLHFTLYRVTQELPEK------------------NDSA-------VSYFDLQDFV---------- 579
                |:.:||:.:|.|                  |.||       |.....:||:          
plant   414 ----TMIKVTKNVPRKLTESTLYSSPVYCDDASMNKSAMQSEKMTVPAISGEDFMAIMKRMAELE 474

  Fly   580 EGVNYFREEPTLICRHKESVQGSHVMHHN 608
            :.|.....:||::...||.:..:.:...|
plant   475 QKVTVLSAQPTVMPPDKEEMLNAAISRSN 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:282550
CRAL_TRIO_N 222..268 CDD:215024 13/47 (28%)
CRAL_TRIO 293..456 CDD:279044 49/169 (29%)
SFH12NP_568006.1 CRAL_TRIO_N 54..100 CDD:215024 13/54 (24%)
SEC14 120..290 CDD:214706 52/178 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 89 1.000 Domainoid score I2681
eggNOG 1 0.900 - - E1_KOG1471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1133487at2759
OrthoFinder 1 1.000 - - FOG0000197
OrthoInspector 1 1.000 - - otm2464
orthoMCL 1 0.900 - - OOG6_100867
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X399
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.720

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