DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and COW1

DIOPT Version :9

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_001328041.1 Gene:COW1 / 829610 AraportID:AT4G34580 Length:554 Species:Arabidopsis thaliana


Alignment Length:426 Identity:101/426 - (23%)
Similarity:201/426 - (47%) Gaps:71/426 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 QASDQQHSILLDGDFIARSLGQLSPMQESKLLELRKMLDG-VDDLERVPSYQTILRFLAARDWHV 258
            ::|.:..|:.::.|..|..|..|...:::.:|:  ::|.. :|||      ..:||||.||.:.:
plant    44 RSSSRVMSVPIEDDIDAEDLQALDAFRQALILD--ELLPSKLDDL------HMMLRFLRARKFDI 100

  Fly   259 SQAYAMLCDSLRWRREHRIDALLAEYSKPAV--VVEHFPGGWHHLDKDGRPVYILRLGHMDVKGL 321
            .:|..|..|.::||::...|.::.::....:  |::|:|.|:|.:||:||||||.|||.:|...|
plant   101 EKAKQMWSDMIQWRKDFGADTIIEDFDFEEIDEVMKHYPQGYHGVDKEGRPVYIERLGQIDANKL 165

  Fly   322 LKSLGMDGLLRLALHICEEGIQ-KINESAERLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNII 385
            |:...||..::..:...|:..: |....:....|.:...:.::|::|:.:::..:...:.|..:.
plant   166 LQVTTMDRYVKYHVKEFEKTFKVKFPSCSVAANKHIDQSTTILDVQGVGLKNFSKSARELLQRLC 230

  Fly   386 ETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIV 450
            :....|||||:.|:.::.|...|.:.|:.|.:|:|..|.:|....| :..|.|  |.:.:|...:
plant   231 KIDNENYPETLNRMFIINAGSGFRLLWSTVKSFLDPKTTAKIHVLG-NKYHSK--LLEVIDASEL 292

  Fly   451 PDFLGGPCKTMIHEGGLV---------PKTL-------YKMNSLEDHDDEVTAELPTTAAAQALV 499
            |:|.||.| |...:||.:         |:.|       .|.:.:.:.:.:...:..:|:..::| 
plant   293 PEFFGGAC-TCEDKGGCMRSDKGPWNDPEVLKIAINREAKCSPISEDEHKHVDQGRSTSGFESL- 355

  Fly   500 PGKRLSANQQHDHRNLY--------KSVDL----KAGFAH--------ELLIRNEDPK------- 537
              :|:  .::.|..|:|        ||:|:    |...|.        |..:|...||       
plant   356 --ERI--KKKTDEDNVYEKQIATIDKSMDMAWLAKTQKAENFPISKGLECYVRKGAPKKGDGLLV 416

  Fly   538 -SVLTWDFDVMRNDLHFTLYRVTQELPEKNDSAVSY 572
             .|:.:...::      .:.|:::::|.|...|..|
plant   417 GGVMAFVMGIV------AMVRLSKDVPRKLTEAALY 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:282550
CRAL_TRIO_N 222..268 CDD:215024 13/46 (28%)
CRAL_TRIO 293..456 CDD:279044 47/163 (29%)
COW1NP_001328041.1 CRAL_TRIO_N 64..107 CDD:215024 13/50 (26%)
SEC14 133..298 CDD:214706 48/167 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 89 1.000 Domainoid score I2681
eggNOG 1 0.900 - - E1_KOG1471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1133487at2759
OrthoFinder 1 1.000 - - FOG0000197
OrthoInspector 1 1.000 - - otm2464
orthoMCL 1 0.900 - - OOG6_100867
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X399
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.720

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