DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and Clvs1

DIOPT Version :9

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_001342112.1 Gene:Clvs1 / 74438 MGIID:1921688 Length:354 Species:Mus musculus


Alignment Length:419 Identity:84/419 - (20%)
Similarity:162/419 - (38%) Gaps:99/419 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 TTLKGKEIIEFFIGQLREEGITHVERWTSPSDATKSP-TLDQASDQQHSILLDGDFIARSLGQLS 218
            :.|...:.:..:.|.|.:  :||::...||....|:. .|::..|..|                 
Mouse     5 SVLPSPQSLSTWEGDLAK--MTHLQAGLSPDTIEKARLELNENPDILH----------------- 50

  Fly   219 PMQESKLLELRKMLDGVDDLERVPSYQT-ILRFLAARDWHVSQAYAMLCDSLRWR-------REH 275
                ..:.::|.|:....|:..:.:... |||||.||.:|.:.|:.:|....::|       :..
Mouse    51 ----QDIQQVRDMIITRPDIGFLRTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNF 111

  Fly   276 RIDALLAEYSKPAV---VVEHFPGGWHHLDKDGRPVYILRLGHMD-----VKGLLKSLGMDGLLR 332
            :.|       .|.:   :::.|||...:.|..||.:.:|...:.|     ...:|:::    ||.
Mouse   112 KAD-------DPGIKRALIDGFPGVLENRDHYGRKILLLFAANWDQSRNSFTDILRAI----LLS 165

  Fly   333 LALHICEEGIQKINESAERLEKPVLNWSLLVDLEGLSMRHLWR--PGIKALLNIIETVERNYPET 395
            |.:.|.:..:| ||           .:.|::|....|.:...:  |.|..|  .||.::.::|..
Mouse   166 LEVLIEDPELQ-IN-----------GFILIIDWSNFSFKQASKLTPSILKL--AIEGLQDSFPAR 216

  Fly   396 MGRVLVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIVPDFLGGPCKT 460
            .|.|..|..|......:|::..|:.:.||.:...:|.:.    :.|.|.:..|.:|...||....
Mouse   217 FGGVHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNL----NSLHQLIHPEFLPSEFGGTLPP 277

  Fly   461 MIHEGGLVPKTLYKMNSLEDHDDEVTAELPTTAAAQALVPGKRLSANQQHDHRNLYKSVD----- 520
              ::.|...:||...:..:::|       .|..:..|:        :.:|...||.:...     
Mouse   278 --YDMGTWARTLLGPDYSDEND-------YTHTSYNAM--------HVKHTCSNLERECSPKPMK 325

  Fly   521 -----LKAG-FAHELLIRNEDPKSVLTWD 543
                 ::|| ..||....||:.:.:|..|
Mouse   326 RSQSVVEAGTLKHEEKGENENTQPLLALD 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:282550 3/17 (18%)
CRAL_TRIO_N 222..268 CDD:215024 13/46 (28%)
CRAL_TRIO 293..456 CDD:279044 38/169 (22%)
Clvs1NP_001342112.1 CRAL_TRIO_N 51..97 CDD:215024 13/45 (29%)
CRAL_TRIO 125..274 CDD:366224 39/170 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 317..354 7/36 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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