DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and CG3091

DIOPT Version :9

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_001284816.1 Gene:CG3091 / 31210 FlyBaseID:FBgn0029608 Length:303 Species:Drosophila melanogaster


Alignment Length:137 Identity:30/137 - (21%)
Similarity:62/137 - (45%) Gaps:12/137 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 LVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSAFIDEHTRSK 426
            :||:.|.::|||....|..|...::.::..||..:..:.|:..|.......:::|.|:.|..|:.
  Fly   171 IVDIGGYTLRHLAYVSIFVLRVYMKFLQEAYPSRLQAMHVINCPTYLDKLISMMSPFLREEVRNM 235

  Fly   427 FLFYGPDCAHMKDGLAQYLDEEIVPDFLGGPCKTMIHEGGLVPKTLYK-MNSLEDHDDEVTAELP 490
            ..::    ....|.|.:.:..:::|:..||       :.|.|.:...| :.|:.|:...::.|..
  Fly   236 IRYH----TEGMDSLYKEVPRDMLPNEYGG-------KAGTVAELKAKGIQSIRDNAAYLSDERY 289

  Fly   491 TTAAAQA 497
            ...|||:
  Fly   290 WKVAAQS 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:282550
CRAL_TRIO_N 222..268 CDD:215024
CRAL_TRIO 293..456 CDD:279044 19/93 (20%)
CG3091NP_001284816.1 SEC14 101..262 CDD:238099 21/101 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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