DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and C34C12.6

DIOPT Version :9

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_497717.2 Gene:C34C12.6 / 175452 WormBaseID:WBGene00007925 Length:400 Species:Caenorhabditis elegans


Alignment Length:380 Identity:75/380 - (19%)
Similarity:141/380 - (37%) Gaps:97/380 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   233 DGVDDLERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRREHRIDALL---AEYSKPAVVVEHF 294
            |..:....:||....|:|:|:         :.|.|. :|..||  :|.|   ..:|:|...::.|
 Worm    80 DFAEKFFELPSIAPFLQFIAS---------SRLQDR-QWSDEH--NAFLFVERAWSQPKEFIKTF 132

  Fly   295 PGGWHHLDKDGRPVYILR-LGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAERLEKPVLN 358
            .      ..|    |:|. .|:.:   :|:.|    :||             .|..:..:|..:.
 Worm   133 K------TSD----YLLHCFGYSE---MLQQL----ILR-------------REKKQSADKGPVQ 167

  Fly   359 WSLLVDLEGLSMRHLWRP--GIKALLNIIETVERN-YPETMGRVLVVRAPRVFPIAWTIVSAFID 420
            :.::.||..:::.....|  |...|..|...:.:: :||.:.|:.:...||:..:.|.:...|:.
 Worm   168 FIVIFDLNTVNITDYVNPMSGYMKLWQIRSELWQDWFPEMVQRIYLTNPPRLLGLLWKVARVFLS 232

  Fly   421 EHTRSKFLFYGPDCAHMKDGLA-QYLDEEIVPDFLGGPCKTMIHEGGLVPKTLYKMNSLEDHDDE 484
            |....:.     :....|..|| ::|...:||...||..                :|::...|:.
 Worm   233 EENLKRI-----EIISDKSDLAGKFLPPWLVPKEYGGEF----------------VNTVPPGDET 276

  Fly   485 VTAELPTTAAAQALVPGKRLSANQQHDHRNLYKSVDLKAGFAHELLIRNEDPKSVLTWDFDVM-- 547
            ..:......:|....|.:....:.....::.:|.|.....|..::.:.|   ...|.|||...  
 Worm   277 GVSVRRKITSADYYKPYQHYKEHGIDRPKSSHKDVSPAEKFVFKIQVPN---GKKLLWDFTASGE 338

  Fly   548 ----------RNDLHF-TLYRVTQELPEK------NDSAVSYFDLQDFVEGVNYF 585
                      ||||.| :|:.:|.:|.|:      :||.:|:    :|.....||
 Worm   339 LQFAIFRGNNRNDLVFPSLHLITNKLNEEGSLDNVSDSEISF----EFQNLSGYF 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:282550
CRAL_TRIO_N 222..268 CDD:215024 7/34 (21%)
CRAL_TRIO 293..456 CDD:279044 31/167 (19%)
C34C12.6NP_497717.2 SEC14 91..265 CDD:214706 44/220 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000197
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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