DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and F18A11.2

DIOPT Version :10

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_496771.1 Gene:F18A11.2 / 174945 WormBaseID:WBGene00008929 Length:388 Species:Caenorhabditis elegans


Alignment Length:411 Identity:80/411 - (19%)
Similarity:161/411 - (39%) Gaps:78/411 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 SPMQESKLLELRKMLDGVDDLERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRREHRIDALLA 282
            :|::::.:|.:...:|..|| :.......:.|:|.|......:|...|...|..|:  .||  |.
 Worm     4 NPVEKAAILRIIDSIDARDD-DYCAHEFNVYRWLVAYGNEEEEAAKALKRHLNIRK--TID--LN 63

  Fly   283 EYSKPAVVVE-----HFP---GGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICE 339
            .||....:.|     :.|   .|.:|.| |.:.:...|.|.:|:.||:.::.|...:::.|.:.|
 Worm    64 SYSSKTELEEDELNKYVPIDVIGQNHQD-DNKVLMFERTGKIDISGLVDNVLMHKFMQIKLKMME 127

  Fly   340 EGIQKINESAERLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLN-----IIETVERNYPETMGRV 399
            ...||: .:|||..........::||:|:|    :.|.:.::|.     :..|:..:||:.:.::
 Worm   128 GVHQKV-VAAERKTGRQSGGLFIMDLDGIS----FSPKLISVLTGPYRIMWGTLFDHYPQLLQKI 187

  Fly   400 LVVRAPRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIVPDFLGGPCKTMIHE 464
            ::|.||....:.....|.|:.|..:.|.:.......   ..:.::.|:..:|..|||.    :.:
 Worm   188 IIVNAPSFVNVLHQACSPFLPEDYKEKIVITSEPAI---GAIQKHADKCFLPSDLGGD----LEK 245

  Fly   465 GGLVPKTLY-KMNSLEDHDDEVTAELPTTAAAQALVPGKRLSA----------------NQQHDH 512
            ...:|...: |||...:.:.|..:.|..:      ||..:.:.                |:...|
 Worm   246 TTSLPMAPFPKMNKKYEKEKEKVSLLAIS------VPAGKYTVQKFSWKKGDEVEFFLHNESSFH 304

  Fly   513 RNLY------KSVDLKAGFAHELLIRNEDP--KSVLTWDFDVMRNDLHFTLY------------R 557
            ..::      |.:||    ..|:.:..|.|  ..:.:|.:.|..:..:|..|            .
 Worm   305 YFMFHSEEDTKDMDL----WREMTVGCERPALSQIDSWKYTVPIDGFYFIRYGNHNSWYFSTTVN 365

  Fly   558 VTQELPEKNDSAVSYFDLQDF 578
            |...:..:|...:....::.|
 Worm   366 VNHFISNENGERIELVPIETF 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:398400
CRAL_TRIO_N 222..268 CDD:215024 9/45 (20%)
CRAL_TRIO 293..456 CDD:459890 37/170 (22%)
F18A11.2NP_496771.1 SEC14 72..244 CDD:214706 40/184 (22%)
Blue background indicates that the domain is not in the aligned region.

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