DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and Sec14l4

DIOPT Version :9

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_666125.1 Gene:Sec14l4 / 103655 MGIID:2144095 Length:403 Species:Mus musculus


Alignment Length:414 Identity:111/414 - (26%)
Similarity:196/414 - (47%) Gaps:58/414 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 LGQLSPMQESKLLELRKML-DGVDDLERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRREHRI 277
            :|.|||.|:..|...|:.| |.:..|.:...| .:||:|.||::.:.::..||...:.:|.:..:
Mouse     5 VGDLSPQQQEALARFRETLQDLLPTLPKADDY-FLLRWLRARNFDLKKSEDMLRKHVEFRNQQNL 68

  Fly   278 DALLAEYSKPAVVVEHFPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGI 342
            |.:|. :..|.|:..:..||....|.:|.||:...:|.||.|||..|.....::|..:.:||..:
Mouse    69 DQILT-WQAPEVIQLYDSGGLSGYDYEGCPVWFDIIGTMDPKGLFMSASKQDMIRKRIKVCEMLL 132

  Fly   343 QKINESAERLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVLVVRAPRV 407
            .:....:::|.:.:....::.|:||||:||||:|.::........:|.|||||:..::::|||::
Mouse   133 HECELQSQKLGRKIERMVMVFDMEGLSLRHLWKPAVEVYQQFFAILEANYPETVKNLIIIRAPKL 197

  Fly   408 FPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIVPDFLGG---------PCKTMIH 463
            ||:|:.:|.:|:.|.|:.|.:..|   .:.|..|.:::..:.:|...||         .|.|.|:
Mouse   198 FPVAFNLVKSFMGEETQKKIVILG---GNWKQELVKFVSPDQLPVEFGGTMTDPDGNPKCLTKIN 259

  Fly   464 EGGLVPKTLYKMNSLEDHDDEVTAELPTTAAAQALVPGKRLSANQQHDHRNLYKSVDLKAGFAHE 528
            .||.|||..|..|.          |.|                  |::|     ||.:..|.:|:
Mouse   260 YGGEVPKRYYLSNQ----------ERP------------------QYEH-----SVVVGRGSSHQ 291

  Fly   529 LLIRNE--DPKSVLTWDFDVMRNDLHFTLYRVTQELPEKNDSAVSYFDLQDFVEGVNYFREEPTL 591
              :.||  .|..||.|.|.....|:.|.::..|: :.|:..:......|.......:...|:.:|
Mouse   292 --VENEILFPGCVLRWQFASDGGDIGFGVFLKTR-MGERQKAGEMVEVLPSQRYNAHMVPEDGSL 353

  Fly   592 ICRHKESVQGSHVMHHNDSY-LMH 614
            .|..    .|.:|:..:::| |:|
Mouse   354 NCLK----AGVYVLRFDNTYSLLH 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:282550
CRAL_TRIO_N 222..268 CDD:215024 13/46 (28%)
CRAL_TRIO 293..456 CDD:279044 48/162 (30%)
Sec14l4NP_666125.1 CRAL_TRIO_N 13..59 CDD:215024 13/46 (28%)
SEC14 77..244 CDD:214706 51/169 (30%)
GOLD_2 284..379 CDD:290608 22/97 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842063
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1133487at2759
OrthoFinder 1 1.000 - - FOG0000197
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.750

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