DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment retm and si:dkey-237i9.1

DIOPT Version :9

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:XP_021332743.1 Gene:si:dkey-237i9.1 / 100535835 ZFINID:ZDB-GENE-060503-441 Length:719 Species:Danio rerio


Alignment Length:737 Identity:328/737 - (44%)
Similarity:446/737 - (60%) Gaps:103/737 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVQKFQSPVRVYKYPFELVMKAYERRFPTCPQMPIVLDCEVIKDESLEDGAKRNTSRRCKLAVDA 65
            ||||:||||||||:||||||.|||||||||..:|:.:|.:||.:|:.|||:.....|||||.|||
Zfish     1 MVQKYQSPVRVYKHPFELVMAAYERRFPTCHLIPMFVDSDVISEENSEDGSFNKIERRCKLDVDA 65

  Fly    66 PYIFKKLIGVDHVYFLQHNFLDLANRTLSIEAVNESFSSRIEIFERCRYYAHPDNSEWTCFDQSA 130
            |.:.|::.|||:|||:|.|.|:...|||.||:.||:||:|:.|.|.|.|..||:|.|||||:|||
Zfish    66 PRLLKRIAGVDYVYFIQKNSLNHRERTLCIESHNETFSNRVVIHELCCYSVHPENEEWTCFEQSA 130

  Fly   131 TLDIKNFFGFEHSMEKMGMKQYTQTTLKGKEIIEFFIGQLREEGITHVERWT-SPSDATKS---- 190
            :||||:|||||.::||:.||||..:..|||||||:::.:|.:|||.:|.||: .||..|||    
Zfish   131 SLDIKSFFGFESTVEKIAMKQYASSIKKGKEIIEYYLKELEDEGIIYVPRWSVCPSSPTKSMKPV 195

  Fly   191 --------PTL---------------DQASDQQHSI----------LLDGDFIARSLGQLSPMQE 222
                    ||:               .:.|:...|:          .||.|:|.|.||.|:|:||
Zfish   196 VRPELHLIPTVTIEVPPVCMNDTQVCKETSNPLSSLNDTLIASPDDKLDADYIKRYLGDLTPLQE 260

  Fly   223 SKLLELRKMLDGVDDLERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKP 287
            |.|:.||..|..... .::|..:.|||||.|||:::.:|..:||.||.||::|::|.||..:|.|
Zfish   261 SCLIRLRHWLQETHK-GKIPKDEHILRFLRARDFNIDKAREILCQSLTWRKQHQVDYLLDTWSSP 324

  Fly   288 AVVVEHFPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQKINESAERL 352
            .|:.:.:.|||||.|.||||:|||||||||.|||:::||.:.|||..|.|.|||:::..|:.:..
Zfish   325 QVLHDFYTGGWHHHDNDGRPLYILRLGHMDTKGLVRALGEESLLRHVLSINEEGLRRCEENTKVF 389

  Fly   353 EKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVLVVRAPRVFPIAWTIVSA 417
            .:|:..|:.|||||||:|||||||.:||||.|||.||.|||||:||:|::|||||||:.||:||.
Zfish   390 GRPISCWTCLVDLEGLNMRHLWRPAVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSP 454

  Fly   418 FIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIVPDFLGGPCKTMIHEGGLVPKTLYKMNSLEDHD 482
            ||||:||.|||.|..:......||..|:|:|::||||||.|...:.|||||||:||: .:.|..:
Zfish   455 FIDENTRKKFLIYAGNDYQGSGGLVDYIDKEVIPDFLGGECMCEVPEGGLVPKSLYR-TAEELEN 518

  Fly   483 DEVTAELPTTAAAQALVPGKRLSANQQHDHRNLYKSVDLKAGFAHELLIRNEDPKSVLTWDFDVM 547
            ||:.....|                       :|:|..:..|..||.||...|..||:||||||.
Zfish   519 DEIRLWTET-----------------------IYQSASIFKGAPHEQLIEIIDATSVITWDFDVC 560

  Fly   548 RNDLHFTLYRVTQ-ELPEKNDSAVSY-----------FDLQDFVEGVNYFREEPTLICRHKESVQ 600
            :.|:.|.:|...| ..|.:.|...::           ...:.::.|.:|...|.:|.|:..||||
Zfish   561 KGDVIFNIYHSKQAPQPARKDPLATHGITSPAGNNVQLIEKTWLLGQDYSMVESSLTCKEGESVQ 625

  Fly   601 GSHVMHHNDSYLMHW---FSPSGAQLNV---------------------FYEVLSSANYKGSMTS 641
            ||||......|::.|   ..|:.|..|:                     :.|||.|.:::|||||
Zfish   626 GSHVTRWPGFYILQWKFHSMPACAATNLSRVDDVLATLQVSSHKCKVMYYTEVLGSEDFRGSMTS 690

  Fly   642 LQSAFS--SNSSAA--SSVQSR 659
            |:|:.|  |..|||  ||.||:
Zfish   691 LESSHSGFSQLSAATTSSSQSQ 712

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:282550 88/155 (57%)
CRAL_TRIO_N 222..268 CDD:215024 18/45 (40%)
CRAL_TRIO 293..456 CDD:279044 96/162 (59%)
si:dkey-237i9.1XP_021332743.1 PRELI 17..173 CDD:309720 88/155 (57%)
CRAL_TRIO_N 260..305 CDD:215024 18/45 (40%)
CRAL_TRIO 331..494 CDD:306996 97/162 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 218 1.000 Domainoid score I2602
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 537 1.000 Inparanoid score I1159
OMA 1 1.010 - - QHG49351
OrthoDB 1 1.010 - - D1133487at2759
OrthoFinder 1 1.000 - - FOG0000197
OrthoInspector 1 1.000 - - oto40555
orthoMCL 1 0.900 - - OOG6_100867
Panther 1 1.100 - - O PTHR23324
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X399
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.980

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