DRSC/TRiP Functional Genomics Resources

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Protein Alignment retm and sec14l3

DIOPT Version :10

Sequence 1:NP_001260132.1 Gene:retm / 33899 FlyBaseID:FBgn0031814 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_001120265.1 Gene:sec14l3 / 100145318 XenbaseID:XB-GENE-951877 Length:410 Species:Xenopus tropicalis


Alignment Length:413 Identity:108/413 - (26%)
Similarity:199/413 - (48%) Gaps:60/413 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 LGQLSPMQESKLLELRKMLDGVDDL-ERVPSYQT----ILRFLAARDWHVSQAYAMLCDSLRWRR 273
            :|.|||.||..|::.|   :.|.|| .|:|.:..    :||:|.||.:::.:|..||..::.:|:
 Frog     5 VGDLSPKQEEALVKFR---ENVKDLMPRLPPFSQDDYFLLRWLRARSFNLQKAENMLRKNVEFRK 66

  Fly   274 EHRIDALLAEYSKPAVVVEHFPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHIC 338
            :...|.:|.::..|.||.::..||....|::..|::...:|.:|.||||.|.....|::..:..|
 Frog    67 QMDSDNVLEKWQPPEVVQKYLSGGLCGHDREDSPIWYDVIGPLDPKGLLFSASKQDLMKTKMRDC 131

  Fly   339 EEGIQKINESAERLEKPVLNWSLLVDLEGLSMRHLWRPGIKALLNIIETVERNYPETMGRVLVVR 403
            |.........:|:|.|.|.:..::.|:|||.::|||:|.::....|::..|.||||.:.|:.|::
 Frog   132 EVLHHACRMQSEKLGKRVEDVVMIYDVEGLGLKHLWKPAVELYGEILQMFEDNYPEALKRLFVIK 196

  Fly   404 APRVFPIAWTIVSAFIDEHTRSKFLFYGPDCAHMKDGLAQYLDEEIVPDFLGG---------PCK 459
            ||::||:|:.::..|:.|.||.|.:..|.   :.:|.|.:|:..|.:|.:.||         .||
 Frog   197 APKLFPVAYNLIKHFLSEDTRRKIMVLGD---NWQDVLKKYIAPEELPQYYGGTLTDPDGDPKCK 258

  Fly   460 TMIHEGGLVPKTLYKMNSLEDHDDEVTAELPTTAAAQALVPGKRLSANQQHDHRNLYKSVDLKAG 524
            :.|:.||.:||..|..:.::                                 :|...::::..|
 Frog   259 SKINYGGDIPKKYYVRDQVK---------------------------------QNYENTLNINRG 290

  Fly   525 FAHELLIRNEDPKSVLTWDFDVMRNDLHFTLYRVTQE-LPEKNDSAVSYFDLQDFVEGVNYFREE 588
            .:.::......|..||.|.|.....|:.|.:||.|:. ..:|....|.....|.:  ..:...|:
 Frog   291 SSQQMEYEILFPSCVLRWQFQSDGADIGFGIYRKTKAGERQKAGEMVEVLANQRY--NAHMVPED 353

  Fly   589 PTLICRHKESVQGSHVMHHNDSY 611
            .|:.|    :..|::|:..:::|
 Frog   354 GTMTC----TEPGTYVLRFDNTY 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
retmNP_001260132.1 PRELI 17..173 CDD:398400
CRAL_TRIO_N 222..268 CDD:215024 16/50 (32%)
CRAL_TRIO 293..456 CDD:459890 50/162 (31%)
sec14l3NP_001120265.1 CRAL_TRIO_N 13..60 CDD:215024 16/49 (33%)
SEC14 79..248 CDD:214706 55/171 (32%)
Blue background indicates that the domain is not in the aligned region.

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