DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9527 and gcdhb

DIOPT Version :9

Sequence 1:NP_001137800.1 Gene:CG9527 / 33898 FlyBaseID:FBgn0031813 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001006024.1 Gene:gcdhb / 450003 ZFINID:ZDB-GENE-041010-117 Length:427 Species:Danio rerio


Alignment Length:489 Identity:112/489 - (22%)
Similarity:190/489 - (38%) Gaps:116/489 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 YSGRREEKAAANIYDDKRIFPDFRSGPLEEYR-ERASFCYKRMNVVLEG---EDHIRLKHKVWQW 87
            ::..|.:|.||:.:|.:      :||..::.: .:..|.: |..:.|||   |:.|.::.....:
Zfish    19 FTACRSQKTAASPWDAE------KSGERKQMKAPKVQFNW-RDALDLEGLLTEEEIMIRDSFRTY 76

  Fly    88 MEQHPDYQREPGSDLERTREMANKRQ----HLLWEQQFYGVNEYLGTPHLLLAFGQAIFSYDFST 148
            .::          .|.....|||:.:    .::.|....||   ||.  .:..:|.|..||    
Zfish    77 CQE----------KLMPRILMANRNEIFHREIVSEMGELGV---LGP--TIKGYGCAGTSY---- 122

  Fly   149 SVKFGL-------------STGMFPSTLVSNGSGRLG------KYVAKIADNRILGAYALTEISH 194
             |.:||             |.....|:||.:.....|      ||:.::|...|||.:.|||.:|
Zfish   123 -VAYGLIAREVERVDSGYRSVMSVQSSLVMHPINAYGTEEQKQKYLPRLAQGEILGCFGLTEPNH 186

  Fly   195 GTNALGMRTRATYDVKRQEFIIHTPDFEAAKCWVGN--LGKTCTHAIVYAQLYVPDDKHQGLQAF 257
            |::...|.|:|.|:...     ||.....:|.|:.|  :...|   :|:|:  ..|.|.:|   |
Zfish   187 GSDPGSMETKAKYNSSS-----HTFTLTGSKTWITNSPVADIC---VVWAK--CEDGKVRG---F 238

  Fly   258 LVPIRDERTLLPFPGVTVGDMGEKIGLNGIDNGFVMFNQYRIPKANLLSKTGDIDAQGNYTSKIK 322
            ::    ||.:   .|::...:..|..|.....|.::.::..:|:.|||.|     |.|       
Zfish   239 IL----ERGM---KGLSTPKIEGKFSLRASATGMIIMDEVEVPEENLLPK-----ASG------- 284

  Fly   323 DERKRLGASLGALSVGRVNITAITYVALSKAVTIATRYAASRRQFGPTNSPAEWPVIEYQSQQYR 387
                 |....|.|:..|..|......|.......|.:|...|.|||.       |:...|..|.:
Zfish   285 -----LAGPFGCLNNARYGIAWGALGAAEFCFHAARQYTLDRIQFGV-------PLARNQLMQKK 337

  Fly   388 LIPHLA-TTIALRVATLWIGKENVDLTMKGFTGEDTSQAGMEIHAISSALKPVATWAARDGIQEC 451
            :...|. .|:.|: :.|.:|:.           .|..:|..|   :.|.||..:...|.|..::.
Zfish   338 MADMLTEITLGLQ-SCLQLGRL-----------IDDKKAAPE---MISLLKRNSCGKALDIARQA 387

  Fly   452 REACGGHGYLKSSGLGELRNDNDANCTYEGENNT 485
            |:..||:|......:.....:.:|..||||:..:
Zfish   388 RDMLGGNGIADEYHIIRHVLNLEAVNTYEGQRES 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9527NP_001137800.1 ACAD 52..694 CDD:299127 106/464 (23%)
PLN02312 56..682 CDD:215178 105/460 (23%)
gcdhbNP_001006024.1 GCD 50..418 CDD:173840 104/447 (23%)
CaiA 62..426 CDD:224871 100/439 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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