DRSC/TRiP Functional Genomics Resources

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Protein Alignment Acox3 and Gcdh

DIOPT Version :10

Sequence 1:NP_001137800.1 Gene:Acox3 / 33898 FlyBaseID:FBgn0031813 Length:724 Species:Drosophila melanogaster
Sequence 2:XP_063134240.1 Gene:Gcdh / 364975 RGDID:1308829 Length:472 Species:Rattus norvegicus


Alignment Length:475 Identity:100/475 - (21%)
Similarity:172/475 - (36%) Gaps:139/475 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 EEKAAANIYDDKRIFPDFRSGPLEEYRERASFCYKRM--NVVLEGEDHIRLKHKVWQWMEQHPDY 94
            ||:..|   |:|.|...||           ::|.:|:  .::|...:.:               :
  Rat    66 EEQLTA---DEKLIRDTFR-----------NYCQERLMSRILLANRNEV---------------F 101

  Fly    95 QREPGSDLERTREMANKRQHLLWEQQFYGVNEYLGTPHLLLAFGQAIFSYDFS--TSVKFGLSTG 157
            .|:                 :::|....||            .|..|..|..:  :||.:||.|.
  Rat   102 HRD-----------------IVYEMGELGV------------LGPTIKGYGCAGVSSVAYGLLTR 137

  Fly   158 -------------MFPSTLVSNGSGRLG------KYVAKIADNRILGAYALTEISHGTNALGMRT 203
                         ...|:||.:.....|      ||:.::|...:||.:.|||.:||::...|.|
  Rat   138 ELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGSMET 202

  Fly   204 RATYDVKRQEFIIHTPDFEAAKCWVGNLGKTCTHAIVYAQLYVPDDKHQGLQAFLVPIRDERTLL 268
            ||.::...:.:.:     ...|.|:.| .......:|:|:.     :...::.||:    |:.: 
  Rat   203 RARHNPSNKSYTL-----SGTKTWITN-SPVADLFVVWARC-----EDNCIRGFLL----EKGM- 251

  Fly   269 PFPGVTVGDMGEKIGLNGIDNGFVMFNQYRIPKANLLSKTGDIDAQGNYTSKIKDERKRLGASLG 333
              .|::...:..|..|.....|.::.:...:|:.|:|.         |.:|        |....|
  Rat   252 --RGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLP---------NVSS--------LAGPFG 297

  Fly   334 ALSVGRVNITAITYVALSKAVTIATRYAASRRQFGPTNSPAEWPVIEYQSQQYRLIPHLATTIAL 398
            .|:..|..||.....|....:..|.:||..|.|||.       |:...|..|.:|...| |.|.|
  Rat   298 CLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGV-------PLARNQLVQKKLADML-TEITL 354

  Fly   399 RV-ATLWIGKENVDLTMKGFTGEDTSQAGMEIHAISSALKPVATWAARDGIQECREACGGHGYLK 462
            .: |.|.:|:.           :|..:|..|   :.|.||......|.|..::.|:..||:|...
  Rat   355 GLHACLQLGRL-----------KDQDKATPE---MVSLLKRNNCGKALDIARQARDILGGNGISD 405

  Fly   463 SSGLGELRNDNDANCTYEGE 482
            ...:.....:.:|..||||:
  Rat   406 EYHVIRHAMNLEAVNTYEGQ 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Acox3NP_001137800.1 ACAD 52..694 CDD:447864 92/455 (20%)
GcdhXP_063134240.1 None

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