DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9527 and Gcdh

DIOPT Version :9

Sequence 1:NP_001137800.1 Gene:CG9527 / 33898 FlyBaseID:FBgn0031813 Length:724 Species:Drosophila melanogaster
Sequence 2:NP_001102366.1 Gene:Gcdh / 364975 RGDID:1308829 Length:447 Species:Rattus norvegicus


Alignment Length:477 Identity:100/477 - (20%)
Similarity:173/477 - (36%) Gaps:139/477 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 EEKAAANIYDDKRIFPDFRSGPLEEYRERASFCYKRM--NVVLEGEDHIRLKHKVWQWMEQHPDY 94
            ||:..|   |:|.|...||           ::|.:|:  .::|...:.:               :
  Rat    66 EEQLTA---DEKLIRDTFR-----------NYCQERLMSRILLANRNEV---------------F 101

  Fly    95 QREPGSDLERTREMANKRQHLLWEQQFYGVNEYLGTPHLLLAFGQAIFSYDFS--TSVKFGLSTG 157
            .|:                 :::|....||            .|..|..|..:  :||.:||.|.
  Rat   102 HRD-----------------IVYEMGELGV------------LGPTIKGYGCAGVSSVAYGLLTR 137

  Fly   158 -------------MFPSTLVSNGSGRLG------KYVAKIADNRILGAYALTEISHGTNALGMRT 203
                         ...|:||.:.....|      ||:.::|...:||.:.|||.:||::...|.|
  Rat   138 ELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDPGSMET 202

  Fly   204 RATYDVKRQEFIIHTPDFEAAKCWVGNLGKTCTHAIVYAQLYVPDDKHQGLQAFLVPIRDERTLL 268
            ||.::...:.:.:     ...|.|:.| .......:|:|:.     :...::.||:    |:.: 
  Rat   203 RARHNPSNKSYTL-----SGTKTWITN-SPVADLFVVWARC-----EDNCIRGFLL----EKGM- 251

  Fly   269 PFPGVTVGDMGEKIGLNGIDNGFVMFNQYRIPKANLLSKTGDIDAQGNYTSKIKDERKRLGASLG 333
              .|::...:..|..|.....|.::.:...:|:.|:|.         |.:|        |....|
  Rat   252 --RGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLP---------NVSS--------LAGPFG 297

  Fly   334 ALSVGRVNITAITYVALSKAVTIATRYAASRRQFGPTNSPAEWPVIEYQSQQYRLIPHLATTIAL 398
            .|:..|..||.....|....:..|.:||..|.|||.       |:...|..|.:|...| |.|.|
  Rat   298 CLNTARYGITWGVLGAAEFCLHTARQYALDRIQFGV-------PLARNQLVQKKLADML-TEITL 354

  Fly   399 RV-ATLWIGKENVDLTMKGFTGEDTSQAGMEIHAISSALKPVATWAARDGIQECREACGGHGYLK 462
            .: |.|.:|:.           :|..:|..|   :.|.||......|.|..::.|:..||:|...
  Rat   355 GLHACLQLGRL-----------KDQDKATPE---MVSLLKRNNCGKALDIARQARDILGGNGISD 405

  Fly   463 SSGLGELRNDNDANCTYEGENN 484
            ...:.....:.:|..||||.::
  Rat   406 EYHVIRHAMNLEAVNTYEGTHD 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9527NP_001137800.1 ACAD 52..694 CDD:299127 92/457 (20%)
PLN02312 56..682 CDD:215178 92/453 (20%)
GcdhNP_001102366.1 GCD 57..443 CDD:173840 100/477 (21%)
CaiA 69..443 CDD:224871 98/474 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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