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Protein Alignment CG9527 and Ivd

DIOPT Version :9

Sequence 1:	NP_001137800.1	Gene:	CG9527 / 33898	FlyBaseID:	FBgn0031813	Length:	724	Species:	Drosophila melanogaster
Sequence 2:	NP_036724.1	Gene:	Ivd / 24513	RGDID:	2936	Length:	424	Species:	Rattus norvegicus

Alignment Length:	451	Identity:	95/451 - (21%)
Similarity:	193/451 - (42%)	Gaps:	93/451 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    75 EDHIRLKHKVWQWMEQH--PDYQREPGSDLERTREMANKRQHLLWEQ----QFYGVN---EYLGT 130
            |:..:|:|.:.::::::  |..|     :::::.:..|.|:  .|:|    ...|:.   :|.|:
  Rat    45 EEQKQLRHTISKFVQENLAPKAQ-----EIDQSNDFKNLRE--FWKQLGSLGVLGITAPVQYGGS 102

  Fly   131 -----PHLLLAFGQAIFSYDFSTSVKFGLSTGMFPSTLVSNGS-GRLGKYVAKIADNRILGAYAL 189
                 .|:|:.  :.|.....:..:.:|..:.:..:.:|.||: .:..||:.|:.....:||.|:
  Rat   103 GLGYLEHVLVM--EEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAM 165

  Fly   190 TEISHGTNALGMRTRATYDVKRQEFIIHTPDFEAAKCWVGNLGKTCTHAIVYAQ---LYVPDDKH 251
            :|.:.|::.:.||.:|  :.|...::::     ..|.|:.| |......:|||:   ..||..:
  Rat   166 SEPNAGSDVVSMRLKA--EKKGDHYVLN-----GNKFWITN-GPDADVLVVYAKTDLTAVPASR- 221

  Fly   252 QGLQAFLVPIRDERTLLPFPGVTVGDMGEKIGLNGIDNGFVMFNQYRIPKANLLSKTGDIDAQGN 316
             |:.||:|    |:.:   ||.:.....:|:|:.|.:...::|...::|.||:||:    :::|.
  Rat   222 -GITAFIV----EKDM---PGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANILSQ----ESKGV 274

  Fly   317 YTSKIKDERKRLGASLGALSVGRVNITAITYVALSKAVTIATRYAASRRQFGPTNSPAEWPVIEY 381
            |......:.:||..:.|.|.:            :...:.....|...|..||.       .:.::
  Rat   275 YVLMSGLDLERLVLAGGPLGI------------MQAVLDHTIPYLHVREAFGQ-------KIGQF 320

  Fly   382 QSQQYRLIPHLATTIALRVATLWIGK--ENVDLTMKGFTGEDTSQAGMEIHAISSALKPVATWAA 444
            |..|.::.......:|.|.....:.:  :...:|.|       ..||:.::...     .||..|
  Rat   321 QLMQGKMADMYTRLMACRQYVYNVARACDEGHITAK-------DCAGVILYTAE-----CATQVA 373

  Fly   445 RDGIQECREACGGHGYLKSSGLGELRNDNDANCTYE-GENNTLIQQASNWLISLQRNNADF 504
            .||||    ..||:||:....:|....|..   .|| |...:.:::    |:..:..||||
  Rat   374 LDGIQ----CLGGNGYINDFPMGRFLRDAK---LYEIGGGTSEVRR----LVIGRAFNADF 423

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.