DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9500 and Tnxb

DIOPT Version :9

Sequence 1:NP_609018.3 Gene:CG9500 / 33888 FlyBaseID:FBgn0031804 Length:292 Species:Drosophila melanogaster
Sequence 2:XP_006525248.1 Gene:Tnxb / 81877 MGIID:1932137 Length:4361 Species:Mus musculus


Alignment Length:228 Identity:75/228 - (32%)
Similarity:118/228 - (51%) Gaps:13/228 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 SDLNTTGLSGRYPSQC----PTYPPAHGIYTVQVLG--LKPFQVSCDAEIAGTGWTVMARRTSNK 124
            :...|.||...:|..|    ...|.|....|:.:.|  .:|..|.||.|..|.||.|..||...:
Mouse  4132 TSFTTGGLRIPFPRDCGEELKNGPSASKTTTIFLNGNRERPLDVFCDMETDGGGWLVFQRRMDGQ 4196

  Fly   125 LNFFRSWAEYKNGFGQLDGDFFIGLDKLHAITKSQPHELYIHLEDFEGQTRYAHYDEIFIESENK 189
            .:|:|.|.||.:|||.:.|:|::|.:.||::|::..:.|.:.|...: :..:|.||...::|..:
Mouse  4197 TDFWRDWEEYAHGFGNISGEFWLGNEALHSLTQAGDYSLRVDLRAGK-EAVFAQYDFFRVDSAKE 4260

  Fly   190 FYAMTKLGEFTGDAGDSMIHNRNQNFSTFDRDNDGWHKNCAEEYVGAWWHLNCTYSNLFGIYVKG 254
            .|.: .|..:.|.|||||.::....||..|||.:....:||..|.||||:.||.|:||.|:|   
Mouse  4261 NYRL-HLEGYHGTAGDSMSYHSGSVFSARDRDPNNLLISCAVSYRGAWWYRNCHYANLNGLY--- 4321

  Fly   255 DEGQYFQWKGIVWHSWRTESYSYKVMQMMVRPK 287
              |.....:|:.|:.|:...:|....:|.:||:
Mouse  4322 --GSTVDHQGVSWYHWKGFEFSVPFTEMKLRPR 4352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9500NP_609018.3 FReD 76..287 CDD:238040 71/216 (33%)
TnxbXP_006525248.1 EGF_2 172..200 CDD:285248
EGF_2 203..231 CDD:285248
EGF_Tenascin 236..262 CDD:376143
EGF_Tenascin 267..293 CDD:376143
EGF_Tenascin 298..325 CDD:376143
EGF_Tenascin 329..356 CDD:376143
EGF_Tenascin 360..386 CDD:376143
EGF_2 389..417 CDD:285248
EGF_Tenascin 422..448 CDD:376143
EGF_2 451..479 CDD:285248
EGF_2 482..510 CDD:285248
DSL <498..541 CDD:366627
EGF_2 541..572 CDD:285248
EGF_Tenascin 577..604 CDD:376143
EGF_2 608..634 CDD:285248
EGF_Tenascin 639..665 CDD:376143
EGF_Tenascin 706..732 CDD:376143
fn3 737..818 CDD:365830
fn3 830..906 CDD:365830
fn3 1074..1142 CDD:365830
fn3 1295..1369 CDD:365830
FN3 1386..1466 CDD:238020
fn3 1484..1558 CDD:365830
fn3 1599..1674 CDD:365830
fn3 1707..1782 CDD:365830
fn3 1804..1874 CDD:365830
fn3 1904..1971 CDD:365830
fn3 2000..2067 CDD:365830
fn3 2102..2164 CDD:365830
FN3 2211..2279 CDD:238020
fn3 2315..2393 CDD:365830
fn3 2426..2496 CDD:365830
fn3 2525..2600 CDD:365830
fn3 2639..2709 CDD:365830
fn3 2748..2823 CDD:365830
fn3 2861..2931 CDD:365830
fn3 2970..3043 CDD:365830
fn3 3076..3146 CDD:365830
fn3 3183..3258 CDD:365830
fn3 3291..3361 CDD:365830
fn3 3387..3462 CDD:365830
fn3 3480..3542 CDD:365830
fn3 3569..3649 CDD:365830
fn3 3679..3752 CDD:365830
fn3 3776..3855 CDD:365830
fn3 3875..3953 CDD:365830
FN3 3962..4048 CDD:238020
fn3 4052..4129 CDD:365830
Fibrinogen_C 4143..4352 CDD:278572 71/215 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100073
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.