DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pez and csw

DIOPT Version :9

Sequence 1:NP_001260127.1 Gene:Pez / 33882 FlyBaseID:FBgn0031799 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_477131.1 Gene:csw / 45278 FlyBaseID:FBgn0000382 Length:945 Species:Drosophila melanogaster


Alignment Length:954 Identity:183/954 - (19%)
Similarity:322/954 - (33%) Gaps:299/954 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 HMQQQQQIQQQQMISSNISLATSANQMLGQSSSCLDLSNNNLHSSSGMLHHGGSNNNNNNDERER 431
            |..|::|:.....|::|                    :||.|           :|||..|::|..
  Fly    20 HKLQEKQVYNNNNINNN--------------------NNNTL-----------NNNNAYNNQRNF 53

  Fly   432 LKAMLPTYRPAPDYETAVQLKY---------RTPSAEF--HNVALAMAAPGNAYYAGSQPDVHNP 485
                        :||.|:|..|         |..|.:|  .....|...|........:|...|.
  Fly    54 ------------EYERAIQAHYGSKGRRSEERERSGKFKASKGRKAKVTPPTETPEAQEPACKNC 106

  Fly   486 GMHNENLLYGHMTAHRYPDVAQPAAALHHHINLYQAQHQPQSHPQPMSPAQAYLELSQRMHMMRH 550
            ..|:|       .|.....||:.|.|..:..|..|.:.:|.| .||.:.|.|... ::.:|.:  
  Fly   107 MTHDE-------LAQIIKGVAKGADAQRNRDNRLQRRRRPLS-AQPSAAASASTS-TESLHRL-- 160

  Fly   551 KAPPPYVNRLSSSSTPDLAVATPRPLQGFRNYVSGSSPDLVSNRTLFNGGQYVALPAGGHAGNIP 615
             .|.|   :.|..:||....|||                          .|:.|...|....|..
  Fly   161 -TPSP---QASYPATPTSWTATP--------------------------PQFPAAFGGASCSNST 195

  Fly   616 TSSGATM---LHQYQYVSHMGHSQPYLPPHGTFENLNMIEEQPSIMSQLRQSAMSQAAAAAAGSV 677
            .|..|||   ||.|.:.            ||   ||:..|.:..|:.:.:.           ||.
  Fly   196 LSLLATMRVQLHGYTWF------------HG---NLSGKEAEKLILERGKN-----------GSF 234

  Fly   678 VTQSSPTLPPSGYRSSVPPPASSPLPPPVVASSHKSATPAPLQRSLVNGSIEPIYENVPLPQRAS 742
            :.:.|.: .|..:..||                   .|...:...::... :..|:       ..
  Fly   235 LVRESQS-KPGDFVLSV-------------------RTDDKVTHVMIRWQ-DKKYD-------VG 271

  Fly   743 GGSSGAANTEAM--RQRASSIQSAPGVVPVPAARNASSNNVVTVTVNSPPDD----GNIKKYGAD 801
            ||.|....:|.:  .:|...:::...||.:....||:  .:....:|:..:.    |..:::.:.
  Fly   272 GGESFGTLSELIDHYKRNPMVETCGTVVHLRQPFNAT--RITAAGINARVEQLVKGGFWEEFESL 334

  Fly   802 RAASTELLFLEPQAPKRTNRAASAAPDMGATPPPRQHRSTASLNKSSTVDMITPAGDTLQQQFSA 866
            :..|.: .|...:..|:.||..:...::    .|..|.....|:...:|     ||        |
  Fly   335 QQDSRD-TFSRNEGYKQENRLKNRYRNI----LPYDHTRVKLLDVEHSV-----AG--------A 381

  Fly   867 MNLSAN-----------TSASTSSMFNSTLDTTSSSAASKDLKRKKRWNFLSRSKTPDKQKSATL 920
            ..::||           ..:|:|...||::.:..:..|::..:........:::......|||.|
  Fly   382 EYINANYIRLPTDGDLYNMSSSSESLNSSVPSCPACTAAQTQRNCSNCQLQNKTCVQCAVKSAIL 446

  Fly   921 GREKATTAGQHSKLAAKLKLAQDDL-NLPNRWS------------TGVNKPQPISGRYSKDKLCQ 972
            ......|..:.|...:|.|.::... :.|:..|            :.||.|...:...|....|.
  Fly   447 PYSNCATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCL 511

  Fly   973 ILDQKLSDSQLFMEFERIPKRREHALYECALLEENEPKNHDPNFLPYDDNRVRLTPCRDNRHGYV 1037
            :                            .||:                           ||...
  Fly   512 V----------------------------GLLK---------------------------RHSND 521

  Fly  1038 NASSISATVGTKQR--------FYIVAQS---PQEPLTMRIFWQCVWEADVYLVVQLTEDMS--- 1088
            ::.::|.::..::|        .||..|.   .|:..|:..||..||:.:..::|..|::..   
  Fly   522 SSGAVSISMAEREREREREMFKTYIATQGCLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGK 586

  Fly  1089 -----YIPRNSHQRLEFGQFQVYQEFSQTTDRCTTIKLRLYHV-----PSRRYRSVWYLQYADWA 1143
                 |.|...... :||..::......:|...|   ||.:.|     |:||   :::..:..|.
  Fly   587 EKCARYWPDEGRSE-QFGHARIQCVSENSTSDYT---LREFLVSWRDQPARR---IFHYHFQVWP 644

  Fly  1144 EQNCPRDVNHFLDFLEELNS--VRLASTQEVPPGHNTNPPVLLHCLEGGGRSGVTLTADLLLYTL 1206
            :...|.|....|:||:::|:  ..||...|.|      .|:.:||..|.||:|..:..|::|..:
  Fly   645 DHGVPADPGCVLNFLQDVNTRQSHLAQAGEKP------GPICVHCSAGIGRTGTFIVIDMILDQI 703

  Fly  1207 DHN---EDLDIPRVIGQLRHQRDSIIPSLAQYKFIYNLLITYLK 1247
            ..|   .::||.|.|..:|.||..::.:.|||||:|..:..|::
  Fly   704 VRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQ 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PezNP_001260127.1 B41 26..230 CDD:214604
FERM_N 26..93 CDD:286467
FERM_M 114..230 CDD:278785
FERM_C_PTPN14_PTPN21 225..317 CDD:270009
Y_phosphatase 1007..1243 CDD:278528 61/264 (23%)
PTPc 1009..1243 CDD:238006 61/262 (23%)
cswNP_477131.1 SH2_C-SH2_SHP_like 211..307 CDD:198185 21/149 (14%)
PTPc 326..744 CDD:214550 98/503 (19%)
PTPc 543..743 CDD:238006 57/212 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443539
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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