DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDZ-GEF and LOC797658

DIOPT Version :9

Sequence 1:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster
Sequence 2:XP_009301929.2 Gene:LOC797658 / 797658 -ID:- Length:598 Species:Danio rerio


Alignment Length:404 Identity:92/404 - (22%)
Similarity:173/404 - (42%) Gaps:79/404 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   759 HVLKVYKADQTCKYVLIYKETTAHEV--VMLTLQEFGIHDPSSNFSLCEVSVGDGGMVKQRRLPD 821
            |...:...|.:.|.:|..:|.:..|:  .:..|.:|.|.:..:.|.|            ...|.|
Zfish    41 HPWYISSTDLSKKLLLKSQEGSDDELRAKICHLVKFWISEFPAEFDL------------NPALAD 93

  Fly   822 QLQNLAERISFAARYYLKLNDSTEPLVPDEL---------------ALELVRESNVHFLHLNAYE 871
            |:::|.:.::...      |::...|:..|.               ::...|:.::.|.||:.||
Zfish    94 QIKDLRDNLNTGG------NETPSQLIDVESVPSYKWKRQVTKRVPSMSKRRKMSLLFDHLDPYE 152

  Fly   872 LAIQLTLQDFANFRQIESTEY---------VDELFELRSRYGVPMLSKFAELVNREMFWVVSEIC 927
            ||..||..::.:|.:|...:|         ||.          |:|.:|..|.|....|:...:.
Zfish   153 LAEHLTYLEYKSFCKILFQDYHSFVMHGCTVDN----------PILERFITLFNSVSQWIQLMVL 207

  Fly   928 AEHNIVRRMKIVKQFIKIARHCKECRNFNSMFAIVSGLGHGAVSRLRQTWEKLPSKYQRLFNDLQ 992
            ::....:|..::..||::|....:.:|||::.|:|.||.:.::|||::|...:.|...::||.|.
Zfish   208 SKPTAPQRAAVIAHFIQVAEKLLQLQNFNTLMAVVGGLSNSSISRLKETQANISSDTNKVFNSLL 272

  Fly   993 DLMDPSRNMSKYRQLVSAELLAQHPIIPFYPIVKKDLTFIHLGNDTRVDG---LINFEKLRMLAK 1054
            |::..|.|.|:||:..:.....:.||:   .:..|||..:|:......|.   .:|..|.:.|..
Zfish   273 DMLTSSGNYSQYRRRFAECTGFRFPIL---AVSLKDLIAVHVALSDWTDAQKTQVNLTKTQQLYA 334

  Fly  1055 EVRLLTHMCSSP------YDLLSILELKGQSPSNALFSLNQMSASQSNAAAGTVIAANAGQATIK 1113
            .::.|:.:.|:|      .|||::|.:          ||:|....:.   ...:......:||..
Zfish   335 ILQELSLVQSNPPHIEANTDLLNLLTV----------SLDQYHTEEE---IYQLSLQREPRATKP 386

  Fly  1114 RRKKSTAAPNPKKM 1127
            ....||::|.|||:
Zfish   387 ANSSSTSSPAPKKL 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_signaling 404..494 CDD:238492
DegQ <422..494 CDD:223343
PDZ_GEF_RA 757..841 CDD:176380 15/83 (18%)
RasGEF 871..1050 CDD:279011 50/190 (26%)
Rhomboid_SP 1252..>1357 CDD:289371
LOC797658XP_009301929.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.