DRSC/TRiP Functional Genomics Resources

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Protein Alignment PDZ-GEF and Gm6309

DIOPT Version :10

Sequence 1:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster
Sequence 2:NP_001365606.1 Gene:Gm6309 / 622306 MGIID:3643357 Length:315 Species:Mus musculus


Alignment Length:171 Identity:37/171 - (21%)
Similarity:56/171 - (32%) Gaps:43/171 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1210 QLSIYSHTSSSSAPNSSLSLRKRHPSSPTLSTTSSTSSTSDHQRRQMHNNGPKFGTASPQAVKKM 1274
            :|.|....:::..|:...:..::...:|  ...|.|....|.|.|:           .|:.||..
Mouse   187 ELQIEQDFATAPEPSEQDASGRQETLAP--RPASETEPQGDKQPRE-----------DPELVKGA 238

  Fly  1275 LSLSESSKIRPHQPFVPRHGSTMAGVIPPLH-HMHAAHGFSTPSPGGVVTSPATSAVANVQCTPS 1338
            :.          .||.|:     |.:..||. |........|.||..|....||...|:.....|
Mouse   239 IL----------DPFEPK-----ATIELPLSLHQAVPASDGTLSPVDVTADEATGVAADFAADVS 288

  Fly  1339 PSPCSHRRLASGGNIIPSRAIHERSHSDTPAPPPPLPSVDL 1379
            |:    |:|.....:          ...||....|||.||:
Mouse   289 PA----RQLFVSYTV----------QLGTPDFVFPLPEVDI 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_RapGEF2_RapGEF6-like 404..496 CDD:467237
RA_PDZ-GEF1 759..841 CDD:340483
RasGEF 871..1050 CDD:459872
Gm6309NP_001365606.1 REM 89..177 CDD:100121
Blue background indicates that the domain is not in the aligned region.

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