DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDZ-GEF and Rgl

DIOPT Version :9

Sequence 1:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster
Sequence 2:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster


Alignment Length:911 Identity:186/911 - (20%)
Similarity:304/911 - (33%) Gaps:309/911 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   546 RSDSTTDELSSVSASNRAHMVRLSSVDMLLDQPDCAPPQTPPVSGSGNMASNFMQQLLQSVNNSS 610
            :|.:...:|..::..|||.|..|.:.|.                      ||..:|    |||::
  Fly    25 KSHTCAYQLQDLTGYNRALMPPLDNTDF----------------------SNAWRQ----VNNNT 63

  Fly   611 AKKSGG-----NSNSDQQDTKGG---------------FMT------------LAPKRRLQKALA 643
            ..:|..     .....|||.|..               .||            .|.:||.:.|.|
  Fly    64 TSQSCAYHQQRQQQQQQQDAKDSKRHYHHHTCPRQRKKSMTPVEPTHLCQKHQEAKQRRSRSASA 128

  Fly   644 KMNLLNKQNHGSSLNDSSDTLLNDPK---SKLSAVSSCSSSTQSSINGCTVSGGGRLYQSQSNPD 705
            |.. .|...|.....|.|..:||..:   :.|..:.:|:.:|..::             |:...|
  Fly   129 KPR-RNSSYHSYDDLDVSSAVLNAERKVVASLKYLCACTGATLRNL-------------SKKTKD 179

  Fly   706 LTSLNYDGGSDAGGNGGGRLQVN-----YL-NAHIHRPSAASTLTTNSTQSH------------- 751
            |.:.||..........|...:.|     || ....|||:..::..::...||             
  Fly   180 LHAKNYTYTKPTWRLWGEEHEKNAIFTVYLKKVRYHRPTPTASNDSDDEISHLEWETVRVRFVKA 244

  Fly   752 ----------------LLPDYPDHVLKVYKADQTCKYV---LIYKETTAHEVVMLTLQE------ 791
                            |...:.:..|..|:...|.|.|   |..:....||..:..|::      
  Fly   245 ATLARLVEALATDDGELESTFINVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEELEQAQQNGQ 309

  Fly   792 ---------FGIHDPSSNFSLCEVSVG-DGGMVKQRRLPDQL--QNLAERISFAAR------YYL 838
                     ..||:......:..:.|. ||       .|:..  .||.:.::||.:      .::
  Fly   310 VMDPAYDPHASIHEQHKKTLVSALHVWLDG-------FPEDWHEDNLQQILAFATKRLKRSDLHI 367

  Fly   839 KLNDSTEPLVPDEL-------------------------------------ALELVRESN----- 861
            |:.:..|.|:...|                                     :.:|..:.|     
  Fly   368 KVLNRLERLIKQSLYGNGGGSGGSENNGHSWLSAARSQQMQQFMIPTHYGSSYDLTDQFNGMYLS 432

  Fly   862 -----------VHFL------HLNAYELAIQLTLQDFANFRQIESTEYVDELFELRSRYG----V 905
                       .|||      |:.....|.|||..|...|:::...:.:...:..|...|    |
  Fly   433 PMGHGPIYRGPTHFLQAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQCLGHTWARRDSGGSETVV 497

  Fly   906 PMLSKFAELVNREMFWVVSEICAEHNIVRRMK------IVKQFIKIARHCKECRNFNSMFAIVSG 964
            ..:::|    |..:|.|||.|     ::.|:|      .:.::|.||:..:..:||:|:.||:|.
  Fly   498 ATINQF----NAVLFRVVSSI-----LIDRLKPQERALNISRWIDIAQELRMLKNFSSLKAIISA 553

  Fly   965 LGHGAVSRLRQTWEKLPSKYQRLFNDLQDLMDPSRNMSKYRQLVSAELLAQHP------------ 1017
            |...::.||.:.||.||.:...:|.:|.::.....|....|:::..|..|::|            
  Fly   554 LNSNSIYRLSKIWEVLPKERMEVFTELANICSEDNNAWTLREVLKREGTAKNPDPGSDHSDRHLQ 618

  Fly  1018 -------------IIPFYPIVKKDLTFIHLGNDTRV--DGLINFEKLR----MLAKEVRLL---- 1059
                         .||:......|||.||..|...:  :.||||:|.|    :|| :::||    
  Fly   619 KLILNLGTQTSHGTIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLA-QIKLLQGAA 682

  Fly  1060 -----------THMCSS--------PYDLLSILELKGQSPSNALFSLNQMSASQSNAAAGTVIAA 1105
                       .|..:|        .::|...||....:|..::.|.|   .|.:|..|.:.   
  Fly   683 NTYNLQADALFDHWFNSMPVFDEREAFELSCRLEPPPPAPRKSVVSTN---TSLTNTTASST--- 741

  Fly  1106 NAGQATIKRRKKSTAAPNPKKMFEEAQMVRRVKAYLNSLKILSDEDLLHKFSLECEPAHGSTYSG 1170
                |:|...:|:.:..:.......:|....:.:..:|.....|.|:.|:        |.|..|.
  Fly   742 ----ASIMGHRKTDSIHSNSSSGAGSQFYCELNSSTSSRHNSLDRDVHHQ--------HASLMSA 794

  Fly  1171 SISHGNTS-HRSGGGGSISG--------GAGGSSGGGG---GGSSSLNAGDQLSIYSHTSSSSAP 1223
            |.|..|.| ..|..||..||        |.|..|.|.|   |||..:||  ||...|..:..|||
  Fly   795 SSSVSNLSLDSSNSGGRQSGKLTHSQSMGNGLKSHGNGTTNGGSPHINA--QLVQPSSGTPHSAP 857

  Fly  1224 N 1224
            :
  Fly   858 D 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_signaling 404..494 CDD:238492
DegQ <422..494 CDD:223343
PDZ_GEF_RA 757..841 CDD:176380 20/110 (18%)
RasGEF 871..1050 CDD:279011 54/215 (25%)
Rhomboid_SP 1252..>1357 CDD:289371
RglNP_001261814.1 REM 246..378 CDD:100121 23/138 (17%)
RasGEF 454..719 CDD:214539 65/274 (24%)
RalGDS_RA 858..946 CDD:176351 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467928
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3629
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.