DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDZ-GEF and CG34393

DIOPT Version :9

Sequence 1:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster
Sequence 2:NP_001285578.1 Gene:CG34393 / 33534 FlyBaseID:FBgn0085422 Length:691 Species:Drosophila melanogaster


Alignment Length:444 Identity:88/444 - (19%)
Similarity:155/444 - (34%) Gaps:114/444 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   607 NNSSAKKSGGNSNSDQQDTKGGFMTLAPKR-RLQKALAKMNLLNKQNHGSSLNDSSDTLLNDPKS 670
            :.:.::::|....:..|..:||..:|.|.. ..:.||...|:..::.|.:....:.|..:...:.
  Fly    76 SGADSREAGAGGGAGLQVAQGGIFSLDPGHLTAETALLGGNIRYRRRHSAEQLSAYDLEMGFQQL 140

  Fly   671 KLSAVSSCSSSTQSSINGCTVSGGGR-----LYQSQSNPDLTS---LNYDGGSDAGGNGGGRLQV 727
            :|               |.|:|.|.:     .|....||...|   :|::  |...|:||    :
  Fly   141 EL---------------GTTISVGPKNEDLVQYDVPKNPHKRSQCDINFE--SSVLGSGG----I 184

  Fly   728 NYLNAHIHRPSAASTLTT---------------------------NSTQSHLLPDYPD----HVL 761
            .|:|..|......|.:.|                           :.....||...|:    ..|
  Fly   185 MYINGRIVSGPLDSLIETLLPKDVVDLDKEFVFSFLLSCRLFLRPHELLGRLLDSVPESECLESL 249

  Fly   762 KVYKADQTCKYVLIYKETTAHEVVMLTLQEFGIHDPSSNFSLCEVSVGDGGMVKQRRLPDQLQNL 826
            ....|:.|.|:...|::    |.:|..::.......:|:.   |.:|.           ..|..|
  Fly   250 VSLLAEWTMKFPYDYRD----ERMMSHVKHIVARCSNSHL---EAAVS-----------QTLSAL 296

  Fly   827 AERISFAARYYLKL-----NDSTEPLVP------DELALELVRESNVHFLHLNAYELAIQLTLQD 880
            .:|::...|:...|     ||.:.|..|      .:.|..:.|.......|:...|         
  Fly   297 LKRLTDLERHEADLRACQTNDKSGPETPLNCPTATQYAQIVCRVEKKLAKHIGGEE--------- 352

  Fly   881 FANFRQIESTEYVD--ELFELRSRYGVP----------MLSKFAELVNREMFWVVSEICAEHNIV 933
               |.|..|...:|  :.::..|..|.|          .|..:.:...|...:|.:||.....|.
  Fly   353 ---FLQCSSMILLDKQKKWDQPSTSGAPPGAQDPKKTCNLETYLDWSARLRLFVCNEILQSVGIE 414

  Fly   934 RRMKIVKQFIKIARHCKECRNFNSMFAIVSGLGHGAVSRLRQTWEKLPSKYQRL 987
            .|.:.|:.:..:|::|....|:||..||:..|...|::||:.||.||....|:|
  Fly   415 GRSRTVELWSGVAQYCLLVGNYNSATAILESLESPAIARLKITWSKLQVTCQQL 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_signaling 404..494 CDD:238492
DegQ <422..494 CDD:223343
PDZ_GEF_RA 757..841 CDD:176380 16/92 (17%)
RasGEF 871..1050 CDD:279011 33/129 (26%)
Rhomboid_SP 1252..>1357 CDD:289371
CG34393NP_001285578.1 REM 196..300 CDD:100121 17/121 (14%)
RasGEF 334..>473 CDD:279011 36/147 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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