DRSC/TRiP Functional Genomics Resources

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Protein Alignment PDZ-GEF and rgl-1

DIOPT Version :9

Sequence 1:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster
Sequence 2:NP_001123140.1 Gene:rgl-1 / 180611 WormBaseID:WBGene00017891 Length:880 Species:Caenorhabditis elegans


Alignment Length:656 Identity:134/656 - (20%)
Similarity:227/656 - (34%) Gaps:228/656 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   778 ETTAHEVVMLTLQEF--GIHDPSSNFSLCEVSVGDGGMVK------------------------Q 816
            :.:..::||..|:.:  ..:|...:|::....:..||..|                        |
 Worm   153 QNSIRQIVMCWLETYPEDFYDSDKDFAMLSSLLDFGGRNKLTELRAKARKQREVFKRIYDEGGMQ 217

  Fly   817 RRLP--------------DQLQNLAERISFAARYYLKLNDSTEPLVPDELALELVRESNVHFLHL 867
            ..||              |...|:.||:..                     .::.:|        
 Worm   218 AALPSLGQYVADMGFDPSDYPNNIKERVKM---------------------FDVGKE-------- 253

  Fly   868 NAYELAIQLTLQDFANFRQIESTEYVDELFELRSRYGVPM------LSKFAELVNREMFWVVSEI 926
            |..::|.|||..|.|.|:::...:....::..|...|..:      :.:|..:..|.|..:|...
 Worm   254 NCVQIAEQLTFWDAALFKELLIHQCQGCVWSKRRTAGERVYTVKATIEQFNSVSQRVMTSIVLPD 318

  Fly   927 CAEHNIVRRMKIVKQFIKIARHCKECRNFNSMFAIVSGLGHGAVSRLRQTWEKLPSKYQRLFNDL 991
            |...   .|.||:.::|.|||..:..:||:|:.|::|.|....|.||:..|..:|::....|.:|
 Worm   319 CRPE---YRAKIISKWIDIARELRALKNFSSLKAVLSSLQSEPVHRLKSAWNSVPNRSISQFREL 380

  Fly   992 QDL--MDPSRNMSKYRQLVSAE------LLAQHPIIPFYPIVKKDL-------TFIHLGN----- 1036
            ..:  .|...:....|:::..|      .|.:..:|......|.|:       |..:|||     
 Worm   381 SSIYETDEDGDQGNARKILEQEGTAKSSPLRRPQLIQNCRRTKSDVNLAECQGTVPYLGNFLTDL 445

  Fly  1037 --------DTRVDGLINFEKLR----MLAKEVRL-----------LTHMCSSPYDLLSILE---- 1074
                    |...:.||||||.|    :||| :||           :..|..:.:..|..|:    
 Worm   446 AMVDESTPDYTPENLINFEKRRKEFEVLAK-LRLFQSAARAYNIPMDRMFCAWFFFLPCLDENEC 509

  Fly  1075 ----LKGQSPSNALFSLNQMSASQSNAAAGTVIAANAGQATIKRRKKSTAAPNPKKMFEEAQMVR 1135
                |:.:.|  .:.|...:|:|:.|::    :.:|..|:|  ..|.||.:    ::|       
 Worm   510 FNRSLEIEKP--PMHSTPDLSSSRINSS----MLSNGSQST--PVKNSTLS----RLF------- 555

  Fly  1136 RVKAYLNSLKILSD------EDLLHKFSLECEPAHGSTYSG-------SISHGNTSHRSGGG--- 1184
                  ||.:...|      ....|:        |..:||.       ||:.|::.:.|.||   
 Worm   556 ------NSSRTSEDSGSHNGNGTWHQ--------HSHSYSSSTNSQIPSINTGSSLNISDGGVPQ 606

  Fly  1185 --------------GSISGGAGG----------SSGGGGGGSSSLNAG---------DQLSIYSH 1216
                          |.:.||..|          ..|......||.||.         ..|..|||
 Worm   607 HSRDSGLQCEDWIDGRLDGGPPGPVPLSGTSTLPRGSNTNTPSSANASWTGGSEFTPSSLFPYSH 671

  Fly  1217 TSSSSAPNSSLSLRKRHPSSPTLSTTSSTSSTSDHQRRQMHNNGPKFGTASPQAVKKMLSLSESS 1281
            :.|.|..:   ||::...|..|.::...||.|....|           :|:|  ::..|:....|
 Worm   672 SRSKSGES---SLQEVKTSMSTRASADGTSGTQSLSR-----------SATP--IRTRLAEVFDS 720

  Fly  1282 KIRPHQ 1287
            |:..||
 Worm   721 KVFSHQ 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_signaling 404..494 CDD:238492
DegQ <422..494 CDD:223343
PDZ_GEF_RA 757..841 CDD:176380 15/102 (15%)
RasGEF 871..1050 CDD:279011 52/212 (25%)
Rhomboid_SP 1252..>1357 CDD:289371 8/36 (22%)
rgl-1NP_001123140.1 RasGEFN 84..211 CDD:214571 8/57 (14%)
RasGEF 254..515 CDD:238087 62/264 (23%)
UBQ 752..843 CDD:294102
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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