DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDZ-GEF and rgl3

DIOPT Version :9

Sequence 1:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster
Sequence 2:XP_012808636.1 Gene:rgl3 / 100485337 XenbaseID:XB-GENE-493046 Length:712 Species:Xenopus tropicalis


Alignment Length:752 Identity:136/752 - (18%)
Similarity:242/752 - (32%) Gaps:263/752 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   743 LTTNSTQSHLLPDYPDHVLKVYKADQTCKYVLIYKETTAHEVVMLTLQEFGIHDPS--------- 798
            |...|.:.|:.|..|                 :....:...||...||.:....|.         
 Frog   141 LERTSEEEHVTPGSP-----------------VPDTPSVQRVVRCLLQSWLEKHPQDFRDAPDCL 188

  Fly   799 ---SNFSLCEVSVGDGGMVKQRRLPDQLQNLAERISFAARYYLKLNDSTEPLVPDELALELVRES 860
               ||:..|:          :|..|..|..|.:.:.      .::.:|..|: ..::.|:.|...
 Frog   189 QLISNYLSCD----------KREPPSPLLRLLQSLQ------EEMEESPTPM-GSKVNLQPVEGD 236

  Fly   861 ------NVHFLHLNAYELAIQLTLQDFANFRQIESTEYVDELFELR----SRYGVPMLSKFAELV 915
                  .:..|.....::|.||||.|...|::::|...:..::..|    :|...|.:.......
 Frog   237 TETPGPTIDLLSFPPQDVAEQLTLIDVDLFQKLQSCHCLGSIWSQRDKKENRNVAPSVRATVAQF 301

  Fly   916 NREMFWVVSEICAEHNI--VRRMKIVKQFIKIARHCKECRNFNSMFAIVSGLGHGAVSRLRQTWE 978
            |.....|::.:.::..:  .:|.|:::::|.||:||:..|||:|:.||:|.|....:.||::||.
 Frog   302 NAVTACVIASVLSDVQLKPQQRAKVLEKWICIAQHCRFLRNFSSLRAILSALQSNPLYRLKRTWA 366

  Fly   979 KLPSKYQRLFNDLQDLMDPSRNMSKYRQLVSAELL----------AQHPI--------------- 1018
            .:......:|:.|.|:.....|....|::::.|.:          ...|:               
 Frog   367 AVSRDNLNIFHKLSDIFSDENNHGMSREILTKEEIPLRRTNSARNEPRPLQRSASQVRSTRVLQG 431

  Fly  1019 -IPFYPIVKKDLTFIHLG-NDTRVDGLINFEKLR----MLAKEVRLLTHMCSSPYDLLSILELKG 1077
             :|:......||..:... .|....|||||||.|    :||| ::.|...|.. |.|.:..|:  
 Frog   432 TVPYLGTFLTDLIMLDTALPDCTEGGLINFEKRRKEYEVLAK-IQKLQLTCRH-YVLTAKPEI-- 492

  Fly  1078 QSPSNALFSLNQMSASQSNAAAGTVIAANAGQATIKRRKKSTAAPNPKKMFEEAQMVRRVKAYLN 1142
               ..|.:|..|::..||...:.|:            ...:.:.||..::  ..::.:|..:.|.
 Frog   493 ---LRAFYSQRQLTEDQSYRISRTI------------EPPADSCPNSPRI--RRKLTKRFSSLLL 540

  Fly  1143 SLKILSDEDLLHKFSLECEPAHGSTYSGSISHGNTSHRSGGGGSISGGAGGSSGGGGGGSSSLNA 1207
            ..::.                                    |..::|.....|    |..:|...
 Frog   541 GSEVF------------------------------------GPKLNGDRVSPS----GSCNSCET 565

  Fly  1208 GDQLSIYSHTSSSSAPN-SSLSLRKRHPSSPTLSTTSSTSSTSDHQRRQMHNNGPKFGTASPQAV 1271
            .|.|      .|:..|| ||.....:.|.:|                                  
 Frog   566 DDGL------ISALCPNESSTQKNMQEPGTP---------------------------------- 590

  Fly  1272 KKMLSLSESSKIRPHQPFVPRHGSTMAGVIPPLHHMHAAHGFSTPSPGGVVTSPATSAVANVQCT 1336
                            |..|||.....              |:..||    .||:          
 Frog   591 ----------------PTTPRHDDQFR--------------FAPRSP----VSPS---------- 611

  Fly  1337 PSPSPCSHRRLA-----------SGGNII---------PSRAIHERS---HSDTPAPPPPLPSVD 1378
             |..|..::::|           :.||:.         .|||:.|||   |:.....|.....|.
 Frog   612 -STQPLYNQQIADLCIIRVSMENTHGNMYKSILLTSQDKSRAVIERSLHKHNIESCQPDEFQLVQ 675

  Fly  1379 LSLESSSVTTFRDLPLRKSVTSGSISSCDSGYVHQQQ 1415
            |..|...:|    :|...:|.....:|.:..:|.:|:
 Frog   676 LLSEGKELT----IPDSANVYYAMNTSANFDFVLRQK 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_signaling 404..494 CDD:238492
DegQ <422..494 CDD:223343
PDZ_GEF_RA 757..841 CDD:176380 13/95 (14%)
RasGEF 871..1050 CDD:279011 50/211 (24%)
Rhomboid_SP 1252..>1357 CDD:289371 14/124 (11%)
rgl3XP_012808636.1 RasGEF_N 91..191 CDD:366199 10/66 (15%)
RasGEF 246..517 CDD:214539 66/289 (23%)
RA_RalGDS_like 623..708 CDD:340449 18/88 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.