DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDZ-GEF and rapgef5a

DIOPT Version :9

Sequence 1:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster
Sequence 2:XP_002665506.2 Gene:rapgef5a / 100331732 ZFINID:ZDB-GENE-030131-7681 Length:615 Species:Danio rerio


Alignment Length:534 Identity:147/534 - (27%)
Similarity:228/534 - (42%) Gaps:121/534 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   610 SAKKSGGNSNSDQQDTKGGFMTLA---------PKRRLQKALAKMNLLNKQNHGSSLNDSSDTLL 665
            |:.:|..:|:.|:..:......|:         |.:.|:..|:.:.|  .::.|::....::.||
Zfish    76 SSSRSTCSSSEDEYPSDSSSSALSCRYVVVSGTPHKILEHLLSDLRL--DEHQGATEGKEAEMLL 138

  Fly   666 NDPKSKLSAVSSCSSSTQSSI-NGCT------VSGGGRLYQSQSNPDLTSLNYDGGSDAGGNGGG 723
            :|.........|.|...|:.: :.||      ..|...||:.:....|.|               
Zfish   139 DDFLLTYLVFMSTSELCQALLGHYCTKRCRGKEEGNEALYRKRKVLHLVS--------------- 188

  Fly   724 RLQVNYLNAHIHRPSAASTLTTNSTQSHLLPD---YPD---------------HVLKVYKADQTC 770
              |.:.|.....|......|...:...::|.|   :|.               |.:..|...|  
Zfish   189 --QWSSLYKDFLREEENVKLFMKTLYRYVLEDVYEFPTLEKDLKEFQKLLRRRHTVDDYSPHQ-- 249

  Fly   771 KYVLIYKETTAHEVVMLTLQEFGIH---DP-SSNFSLCEVSVGDGG-----------------MV 814
            |...:|::        |:|:|..:.   .| .|...:|.|.|....                 :|
Zfish   250 KNKALYQQ--------LSLKENSVSLRASPVESRDVMCRVYVSCDSYLSMRVKPAVVAQELLHIV 306

  Fly   815 KQR--RLPDQLQNLAERISFAARYYLKLNDS--TEPLV----------------------PDELA 853
            .||  |..|.:..||:..|...| .|:.:||  :|.||                      ||   
Zfish   307 SQRMDRCEDDMMLLAQTYSGEKR-VLQPHDSIYSESLVAPGRLIACRRDLSEILPPLTECPD--- 367

  Fly   854 LELVRESNVHFLHLNAYELAIQLTLQDFANFRQIESTEYVDELFELRSRYGVPMLSKF-AELVNR 917
               :.:..|..|.:|.:::|:.||..|:..|..|...|.:...|..::..|..:..:| .:..|.
Zfish   368 ---LGQKPVRLLGINTWDVAVALTNFDWNLFNSIHEQELIFYTFSRQASSGHTVALEFLLQRCNE 429

  Fly   918 EMFWVVSEICAEHNIVRRMKIVKQFIKIARHCKECRNFNSMFAIVSGLGHGAVSRLRQTWEKLPS 982
            ...||:||:....::.:|::::|:|||||.|||..||.||.|||:.||...|||||.|||||:|.
Zfish   430 VQQWVMSEVLLCPSLSKRVQLLKKFIKIAAHCKAQRNLNSSFAIIMGLNTAAVSRLNQTWEKVPG 494

  Fly   983 KYQRLFNDLQDLMDPSRNMSKYRQLVSAELLAQHPIIPFYPIVKKDLTFIHLGNDTRVDGLINFE 1047
            |:::||::|:.|.|||.|...||   .|....:.|.|||.|::.||:||||.||.|..|.|:|||
Zfish   495 KFKKLFSELELLTDPSMNHKAYR---DAFKKMKPPKIPFMPLLLKDITFIHEGNKTFHDNLVNFE 556

  Fly  1048 KLRMLAKEVRLLTH 1061
            ||.|:|..|||:.|
Zfish   557 KLHMIADTVRLIRH 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999
RasGEFN 279..400 CDD:214571
PDZ_signaling 404..494 CDD:238492
DegQ <422..494 CDD:223343
PDZ_GEF_RA 757..841 CDD:176380 24/121 (20%)
RasGEF 871..1050 CDD:279011 77/179 (43%)
Rhomboid_SP 1252..>1357 CDD:289371
rapgef5aXP_002665506.2 RasGEFN 100..237 CDD:214571 25/155 (16%)
RasGEF 375..615 CDD:214539 86/199 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3629
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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