DRSC/TRiP Functional Genomics Resources

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Protein Alignment PDZ-GEF and rapgef4b

DIOPT Version :10

Sequence 1:NP_609012.2 Gene:PDZ-GEF / 33881 FlyBaseID:FBgn0265778 Length:1573 Species:Drosophila melanogaster
Sequence 2:NP_001108368.1 Gene:rapgef4b / 100141331 ZFINID:ZDB-GENE-080219-4 Length:427 Species:Danio rerio


Alignment Length:121 Identity:41/121 - (33%)
Similarity:69/121 - (57%) Gaps:15/121 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 LEAEEIDLSGLVESVVDSD------EEDLAESMDSLTV--RDA-VRDCLEKDPAERSEEDVEVLL 120
            |:.||.|      :|:.||      ||:|.|::..|:.  .|| :|..|.|.|.:|:.||:|::.
Zfish   288 LDDEEED------AVLPSDDEKREAEEELQETLLFLSQIGPDAHMRMILRKPPGQRTAEDLEIIY 346

  Fly   121 EFTQGLKAFTNITLAVRRALCSVMVFAVVDKAGTVVMSDGEELDSWSVLINGAVEI 176
            :....:||.::::..|:|.|..|::|....|||||:.:.|||..||.::..|:|.:
Zfish   347 DELLHIKAVSHLSNTVKRELAGVLIFESHAKAGTVLFNQGEEGTSWYIIQKGSVNV 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDZ-GEFNP_609012.2 CAP_ED 128..237 CDD:237999 18/49 (37%)
RasGEFN 279..400 CDD:214571
PDZ_RapGEF2_RapGEF6-like 404..496 CDD:467237
RA_PDZ-GEF1 759..841 CDD:340483
RasGEF 871..1050 CDD:459872
rapgef4bNP_001108368.1 CAP_ED 44..153 CDD:237999
DEP_Epac 204..332 CDD:239884 16/49 (33%)
CAP_ED 356..>406 CDD:237999 17/47 (36%)
Blue background indicates that the domain is not in the aligned region.

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