DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tctn and Tctn3

DIOPT Version :9

Sequence 1:NP_608998.2 Gene:tctn / 33866 FlyBaseID:FBgn0261697 Length:657 Species:Drosophila melanogaster
Sequence 2:XP_003749157.1 Gene:Tctn3 / 309486 RGDID:1305166 Length:599 Species:Rattus norvegicus


Alignment Length:538 Identity:126/538 - (23%)
Similarity:199/538 - (36%) Gaps:162/538 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PTASTTTEAPATTGAPSSETVSSISTLPEAEVTTTTPAITFPPRVQQKPKVAVASPTMST-ALPL 97
            |..|:|..|     .|:|..:..::    .||.||.     ||.:.:       |||..| ::|.
  Rat    26 PQPSSTARA-----LPTSWVLGPVT----PEVPTTA-----PPDLSE-------SPTPWTLSMPE 69

  Fly    98 N-STEVNSTLSVSGDNTFYYCSCDLQAGRCDLNCCCDNDCP-LETRQVFN-CLPNSLLPQLESRL 159
            | :|:....||:        |.|||..|.||||||||.||. |..|.||: |||.|:.       
  Rat    70 NATTDPFPALSI--------CVCDLTPGTCDLNCCCDKDCDLLHPRTVFSFCLPGSVR------- 119

  Fly   160 EDFQYTHGLPTCQINDGWLC-----VFRSNTKATKTQPPDMNIDTSQYRKWKDNLEYQESDYAQ- 218
                          :..|:|     |||||:..    |..:..|:|...::...:...:|:|.| 
  Rat   120 --------------SSSWVCVDNSLVFRSNSPF----PSRVFTDSSGITQFCVRVNNSKSNYFQE 166

  Fly   219 --------------------------SRPSAGHYKFGQTLQLWQPETKQLATLELPAAYESPN-C 256
                                      ::|....|:.|..:.::.|....::.|..|||..:.. |
  Rat   167 LQTVNATNFQALAAEFGGQFFTSTPKTQPPGPFYRAGDPILIYYPGLSVVSLLRQPAAVGAGGLC 231

  Fly   257 QLKQSVWHLQPIRHVCR--MKDSAQLQESIWS--LLNQTS--NYEILSKPRDLEEPEVNGLIVQV 315
            ........|:.....|.  .||   |..|..|  .|:..|  |:.:|..||.:  .::..:..||
  Rat   232 AESNPAGFLESKSTTCARFFKD---LTSSCTSEPALDAASYHNFRVLKVPRAM--TDLQSMKFQV 291

  Fly   316 CLRGANKSMRCLERGNDTQLDVIVDHVELQLIHNFT-NILEAKLFLEEAKLAEDDNEPLWLRYNV 379
            .:..|:::...|..||..|  .||..|..::..|.| .|.:..:...:..|.......|...:.:
  Rat   292 PVTLASQTSPPLLAGNTCQ--NIVSQVIYEIETNGTFGIQKVSVSFRQTNLTVKPGVSLQQDFII 354

  Fly   380 EFVTLNE----SLTKPTSGPLGYLSGAPVILSRMLPQNSSEDKQLISYHSLNQNIKEFHWLSLPS 440
            .|....:    |...|.||..|||:|.|::   :|..:.|....|:                   
  Rat   355 HFRAFQQREAASPAAPRSGNPGYLTGKPLL---VLTGDLSHSMTLL------------------- 397

  Fly   441 RKPRGSSCQRALDHKEALRFGIDLLTRCELRHAAPLLQAHANHTEYCQGLQAQIWSLLLPHNCTQ 505
             :..|:....|..|:  ::||::.::.|:||      ....|    |..||.:|:..|       
  Rat   398 -QSEGNGLCSAKRHE--VQFGVNTVSGCQLR------PKEVN----CSHLQEEIYQTL------- 442

  Fly   506 LEDVTKVFVSHLGRPQPD 523
                      | |||:|:
  Rat   443 ----------H-GRPRPE 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tctnNP_608998.2 DUF1619 117..403 CDD:285068 82/331 (25%)
Tctn3XP_003749157.1 DUF1619 82..382 CDD:285068 82/331 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10406
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I5288
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004997
OrthoInspector 1 1.000 - - oto98892
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14611
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4647
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.060

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