DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arpc4 and Arpc4

DIOPT Version :9

Sequence 1:NP_608996.1 Gene:Arpc4 / 33864 FlyBaseID:FBgn0284255 Length:168 Species:Drosophila melanogaster
Sequence 2:NP_080828.1 Gene:Arpc4 / 68089 MGIID:1915339 Length:168 Species:Mus musculus


Alignment Length:168 Identity:139/168 - (82%)
Similarity:153/168 - (91%) Gaps:0/168 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAATLKPYLTAVRHSLTAAMCLQDFPSQVVERHNKPEVEICSSKELVLTPVVVSRNEREKVLIEP 65
            |.|||:|||:|||.:|.||:||::|.|||||||||||||:.|||||:|.||.:||||:||||||.
Mouse     1 MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEG 65

  Fly    66 SINSVRVSIAVKQADEIERILCHKFTRFMMRRAESFVILRRKPIEGYDISFLITNFHTEQMYKHK 130
            ||||||||||||||||||:||||||.||||.|||:|.||||||:|||||||||||||||||||||
Mouse    66 SINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHK 130

  Fly   131 LVDFVISFMEEIDKEISEMKLAVNARARTCAEEFLKRF 168
            ||||||.||||||||||||||:||||||..||||||.|
Mouse   131 LVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arpc4NP_608996.1 ARPC4 1..166 CDD:399097 136/164 (83%)
Arpc4NP_080828.1 ARPC4 1..166 CDD:399097 136/164 (83%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849416
Domainoid 1 1.000 272 1.000 Domainoid score I1791
eggNOG 1 0.900 - - E1_KOG1876
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4177
Inparanoid 1 1.050 275 1.000 Inparanoid score I2948
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53638
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003327
OrthoInspector 1 1.000 - - oto93805
orthoMCL 1 0.900 - - OOG6_102934
Panther 1 1.100 - - LDO PTHR22629
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R90
SonicParanoid 1 1.000 - - X2219
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.790

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