DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kr-h1 and Patz1

DIOPT Version :9

Sequence 1:NP_477466.1 Gene:Kr-h1 / 33861 FlyBaseID:FBgn0266450 Length:845 Species:Drosophila melanogaster
Sequence 2:NP_062520.1 Gene:Patz1 / 56218 MGIID:1891832 Length:641 Species:Mus musculus


Alignment Length:480 Identity:116/480 - (24%)
Similarity:169/480 - (35%) Gaps:109/480 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 PASAAVVSQVRKPSASKPQFKCDQCGMTFGSKSAHTSHTKSHSKNQDLSLNGASGAGVAAPVSTA 239
            |.:.|.:...|.|..|...|..|   ||.|:..|..|:..:.|...:.....|:||.:|...|..
Mouse   166 PPARADIMLFRPPGTSDLGFPLD---MTNGAAMAANSNGIAGSMQPEEEAARATGAAIAGQASLP 227

  Fly   240 AIELNDAGLPVGIPKSPTI--KPLANVAAGADPY----------QCNVCQKTFAVPARLIRHYRT 292
            .:...|....|..|.||.:  .|..|||:.|.|.          :.|:....|..|..|     .
Mouse   228 VLPGVDRLPMVAGPLSPQLLTSPFPNVASSAPPLTSKRGRGRPRKANLLDSMFGSPGGL-----R 287

  Fly   293 HTGERPFECEFCHKLFSVKENLQVHRRIH--------------------------------TKER 325
            ..|..|  |..|.|:|:....|:.|...|                                .:.|
Mouse   288 EAGILP--CGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISEDPDGPRKRSR 350

  Fly   326 PYK---CDVCGRAFEHSGKLHRHMRIHTGERPHKCSVCEKTFIQSGQLVIHMRTHTGE--KPYKC 385
            ..|   |::||:.|.....|:||...|:||:|:.|.||...|.:..::..|:|:|.|.  |||.|
Mouse   351 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 415

  Fly   386 PEPGCGKGFTCSKQLKVH-SRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGSKCYKCTICDET 449
              ..|||||:....|..| .:.||.|:|:.|..|...|.....|:.|...|...  ..|.:|.: 
Mouse   416 --QSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRDRLRSHLACHEDK--VPCQVCGK- 475

  Fly   450 FKNKKEMEAHIKGHANEVPDD-----EAEAAAAS----AAASTSAGSSAGSPSLQGVSSNSESSN 505
            :.....|..|:|.| :|.|.:     ..|....|    ..:|.|.|..:.:..|:.....|.:.:
Mouse   476 YLRAAYMADHLKKH-SEGPSNFCSICNREGQKCSHQDLIESSDSYGDLSDASDLKTPEKQSANGS 539

  Fly   506 HSPPSSPPATK------------------KPRQARQPRVSKTVAATLSIP-------TSSPLSPS 545
            .|...:.|..|                  :.:......:.|.....|..|       ..||.||.
Mouse   540 FSCDVAVPKNKMESDGEKKYPCPECGSFFRSKSYLNKHIQKVHVRALGGPLGDLGPALGSPFSPQ 604

  Fly   546 ---SLSSTY------SPSASSMASP 561
               ||..::      |..|||:..|
Mouse   605 QNMSLLESFGFQIVQSAFASSLVDP 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kr-h1NP_477466.1 C2H2 Zn finger 196..216 CDD:275368 6/19 (32%)
COG5048 <270..420 CDD:227381 52/197 (26%)
zf-C2H2 271..293 CDD:278523 4/31 (13%)
C2H2 Zn finger 273..293 CDD:275368 4/19 (21%)
zf-H2C2_2 286..309 CDD:290200 6/22 (27%)
C2H2 Zn finger 301..321 CDD:275368 6/19 (32%)
zf-H2C2_2 313..338 CDD:290200 9/59 (15%)
C2H2 Zn finger 329..349 CDD:275368 7/19 (37%)
zf-H2C2_2 344..366 CDD:290200 10/21 (48%)
C2H2 Zn finger 357..377 CDD:275368 6/19 (32%)
zf-H2C2_2 370..396 CDD:290200 13/27 (48%)
C2H2 Zn finger 385..407 CDD:275368 8/22 (36%)
zf-H2C2_2 400..424 CDD:290200 9/24 (38%)
C2H2 Zn finger 415..435 CDD:275368 5/19 (26%)
zf-C2H2 441..463 CDD:278523 5/21 (24%)
C2H2 Zn finger 443..463 CDD:275368 5/19 (26%)
Patz1NP_062520.1 BTB 30..159 CDD:306997
C2H2 Zn finger 294..314 CDD:275368 6/19 (32%)
SFP1 <329..406 CDD:227516 19/76 (25%)
C2H2 Zn finger 357..377 CDD:275368 7/19 (37%)
zf-H2C2_2 369..394 CDD:316026 11/24 (46%)
SFP1 <379..436 CDD:227516 22/58 (38%)
C2H2 Zn finger 385..405 CDD:275368 6/19 (32%)
C2H2 Zn finger 415..433 CDD:275368 8/19 (42%)
zf-C2H2_6 442..467 CDD:316434 6/24 (25%)
C2H2 Zn finger 444..464 CDD:275368 5/19 (26%)
C2H2 Zn finger 470..489 CDD:275368 5/19 (26%)
zf-C2H2_assoc3 492..558 CDD:318778 11/65 (17%)
C2H2 Zn finger 561..582 CDD:275368 1/20 (5%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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