DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kr-h1 and patz1

DIOPT Version :9

Sequence 1:NP_477466.1 Gene:Kr-h1 / 33861 FlyBaseID:FBgn0266450 Length:845 Species:Drosophila melanogaster
Sequence 2:XP_009300883.1 Gene:patz1 / 560290 ZFINID:ZDB-GENE-111223-4 Length:625 Species:Danio rerio


Alignment Length:599 Identity:137/599 - (22%)
Similarity:219/599 - (36%) Gaps:148/599 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KQIWIKDVLKKSGTELLDISKSPAKAVAVKKSPAKDSATTKMVYYSANQLLIKTEQSSQAQFCLQ 78
            |::.:..:..|...::||.:.:....|.::..|...:|        |..||::    |..:.|.:
Zfish    78 KELEMHTISPKVFRDILDFAYTSKIVVRLECFPELMTA--------AKFLLMR----SVIEICQE 130

  Fly    79 VPPPLTATTTSVGLGVPPSGGQQEHFELLQTPQQRQMQLQLQDQHQQEQQQFVSYQL-------- 135
            |     ...::|.:.||||.| .|| .|.:..:|                  :||.|        
Zfish   131 V-----IKQSNVQILVPPSRG-GEH-SLFRAAEQ------------------LSYPLPVDMSNGS 170

  Fly   136 ----AIQQHQKQQQQQQHESITNAAPTAAPSAQRIKTEP---------VGGF------PASAAVV 181
                |:.............:|:..|...||:|.|:...|         :.||      |....:.
Zfish   171 VSNGAVFTDNNDSDSADPSNISQPAAPGAPTADRLAVSPLEFSSGHLNIDGFKRGKPRPKKEPIA 235

  Fly   182 SQVRKPSASKPQ-----FKCDQCGMTFGSKSAHTSHTKSHSKNQDLSLNGASGAGVAAPVSTAAI 241
            ..|...:::...     |.|..||..|..:....:|...|.     :..|...:|:...|.....
Zfish   236 QPVTYNNSTGQNEEGALFSCGICGKMFPDEVQLRNHEAQHG-----TFTGVMSSGIELVVVDGPT 295

  Fly   242 ELNDA--------GLPVGIPKSPTIKPLANVAAGADPYQCNVCQKTFAVPARLIRHYRTHTGERP 298
            .::..        |||....|....:  .:||       |::|.|.|.....|.||..:|:||:|
Zfish   296 MISHPGQQRFQGNGLPTDTRKRERTR--RHVA-------CDLCGKVFRDVYHLNRHKLSHSGEKP 351

  Fly   299 FECEFCHKLFSVKENLQVHRRIH--TKERPYKCDVCGRAFEHSGKLHRHMR-IHTGERPHKCSVC 360
            :.|..|...|..|:.:..|.|.|  :..:||.|..||:.|.....|:.|:: :||.||||||.:|
Zfish   352 YACPVCGLRFKRKDRMSYHVRSHDGSVGKPYVCQSCGKGFSRPDHLNGHIKQVHTTERPHKCQIC 416

  Fly   361 EKTFIQSGQLVIHMRTHTGEKPYKCPEPGCGKGFTCSKQLKVHSRTHTGEKPY-HCDICFRDFGY 424
            ..:|....:|..|:..|..    |.|...||| :..:..:..|.:.|: |.|: :|.||.:| |.
Zfish   417 NASFATRDRLRSHLACHED----KIPCQVCGK-YLRAAYMTDHLKKHS-EGPHNYCGICNKD-GQ 474

  Fly   425 NHVLKLHRVQHYGSKCYKCTICDETF---KNKKEMEAH--IKGHANEV--------PDDEAEAAA 476
            .:..|.......||        |..|   .|..:::|.  ::|...||        |||      
Zfish   475 ENAGKCPHQDSDGS--------DAVFGDLSNGMDLKAEHKVEGEEMEVTSFIFNGQPDD------ 525

  Fly   477 ASAAASTSAGSSAGSPSLQGVSSNSESSNHSPPSSPPA--TKKPRQARQPRVSKTVAATLSIPTS 539
               |.::..||       :.:.:..:....:......|  ||........||.|..||..|    
Zfish   526 ---AVTSPEGS-------KNIPTTDQEKKFACGECGQAFRTKSYLNKHHHRVHKKRAAAAS---- 576

  Fly   540 SPLSPSSLSSTYSP 553
               |...|:|.:||
Zfish   577 ---SLGDLASPFSP 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kr-h1NP_477466.1 C2H2 Zn finger 196..216 CDD:275368 5/19 (26%)
COG5048 <270..420 CDD:227381 51/153 (33%)
zf-C2H2 271..293 CDD:278523 7/21 (33%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
zf-H2C2_2 286..309 CDD:290200 9/22 (41%)
C2H2 Zn finger 301..321 CDD:275368 6/19 (32%)
zf-H2C2_2 313..338 CDD:290200 9/26 (35%)
C2H2 Zn finger 329..349 CDD:275368 6/20 (30%)
zf-H2C2_2 344..366 CDD:290200 11/22 (50%)
C2H2 Zn finger 357..377 CDD:275368 5/19 (26%)
zf-H2C2_2 370..396 CDD:290200 8/25 (32%)
C2H2 Zn finger 385..407 CDD:275368 5/21 (24%)
zf-H2C2_2 400..424 CDD:290200 8/24 (33%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
zf-C2H2 441..463 CDD:278523 4/26 (15%)
C2H2 Zn finger 443..463 CDD:275368 4/24 (17%)
patz1XP_009300883.1 BTB 27..133 CDD:279045 13/71 (18%)
BTB 39..135 CDD:197585 13/73 (18%)
C2H2 Zn finger 255..299 CDD:275368 9/48 (19%)
C2H2 Zn finger 326..346 CDD:275368 7/19 (37%)
zf-H2C2_2 338..363 CDD:290200 10/24 (42%)
C2H2 Zn finger 354..374 CDD:275368 6/19 (32%)
C2H2 Zn finger 384..402 CDD:275368 6/17 (35%)
C2H2 Zn finger 413..433 CDD:275368 5/19 (26%)
zf-C2H2_assoc3 461..544 CDD:293243 22/107 (21%)
C2H2 Zn finger 547..568 CDD:275368 4/20 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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