DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kr-h1 and topi

DIOPT Version :10

Sequence 1:NP_477466.1 Gene:Kr-h1 / 33861 FlyBaseID:FBgn0266450 Length:845 Species:Drosophila melanogaster
Sequence 2:NP_649945.1 Gene:topi / 41199 FlyBaseID:FBgn0037751 Length:814 Species:Drosophila melanogaster


Alignment Length:409 Identity:111/409 - (27%)
Similarity:162/409 - (39%) Gaps:78/409 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 ESITNAAPTAAPSAQRIKTEPVGGFPASAAVVSQVRKPSASKPQFKCDQCGMTFGSKSAHTSHTK 214
            |.:.:..|..|.|.|  .|.|......|:.::..|         .:|:.|...|...:....|:.
  Fly   327 EMLIDNDPAFATSNQ--NTNPPKKEMFSSLILGSV---------LQCEFCEYIFADIAELLVHSA 380

  Fly   215 SHSKNQ-------DLSLNGASGAGVAAPVSTAAIELNDAGLPVGIPKSPTIKPLANVAAGADPYQ 272
            ||...:       |:.:|.|..|.:  ...|..|.:.:|           |:.| ||.. :..:.
  Fly   381 SHVAERRFECTACDIQMNTAKEASI--HFQTDCIFMREA-----------IRSL-NVTL-SRYFV 430

  Fly   273 CNVCQKTFAVPARLIRHYRT--HTGERPFE--------CEFC-------HKLFSVKENLQVHRRI 320
            ||||:..||....|..|..|  |...|..|        |:||       |...:..|...::::.
  Fly   431 CNVCELKFANTDLLQEHRCTSFHYFPRLNENGKKLLLPCDFCDVNFEFAHDFLAHSEEKHLNKKK 495

  Fly   321 HTKE---------RPYKCDVCGRAFEHSGKLHRHMRIHTGERPHKCSV--CEKTFIQSGQLVIHM 374
            ..||         |.|.||:||:::..|..|.:|:|.|.|.:|..|..  |::.|.....|..|:
  Fly   496 REKETRNTGAGRIRQYLCDICGKSYTQSSHLWQHLRFHQGVKPFVCQEENCDRKFTIRPDLNDHI 560

  Fly   375 R-THTGEKPYKCPEPGCGKGFTCSKQLKVHSRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGS 438
            | .||||:||.|..  |||.|........|...|.||:.|.|:.|.:.|.....||.|:..|.|.
  Fly   561 RKCHTGERPYLCLV--CGKRFLTGSVFYQHRLIHRGERRYECEECGKRFYRADALKNHQRIHTGE 623

  Fly   439 KCYKCTICDETFKNKKEMEAHIKGH-----AN-----EVPDDEAEAAAASAAASTSA----GSSA 489
            |.|.|..|.:||:.:.:.:.||:..     ||     ::...:.|.|||..|.|.:.    ...|
  Fly   624 KPYSCLFCTKTFRQRGDRDKHIRARHSHLDANSRLMMQMQKFQLETAAAQKAQSHNPEQQDNDVA 688

  Fly   490 GSPSLQGVSSNSESSNHSP 508
            |..|...|.|.|...:..|
  Fly   689 GGASTSDVPSGSGFMSTEP 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kr-h1NP_477466.1 C2H2 Zn finger 196..216 CDD:275368 4/19 (21%)
COG5048 <270..420 CDD:227381 56/178 (31%)
C2H2 Zn finger 273..293 CDD:275368 9/21 (43%)
C2H2 Zn finger 301..321 CDD:275368 5/26 (19%)
C2H2 Zn finger 329..349 CDD:275368 8/19 (42%)
C2H2 Zn finger 357..377 CDD:275368 6/22 (27%)
C2H2 Zn finger 385..407 CDD:275368 6/21 (29%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
zf-C2H2 441..463 CDD:395048 7/21 (33%)
C2H2 Zn finger 443..463 CDD:275368 6/19 (32%)
topiNP_649945.1 C2H2 Zn finger 230..250 CDD:275370
C2H2 Zn finger 277..297 CDD:275370
C2H2 Zn finger 431..453 CDD:275368 9/21 (43%)
COG5048 <450..647 CDD:227381 62/198 (31%)
C2H2 Zn finger 469..490 CDD:275368 5/20 (25%)
C2H2 Zn finger 513..564 CDD:275368 17/50 (34%)
C2H2 Zn finger 541..561 CDD:275368 5/19 (26%)
C2H2 Zn finger 572..592 CDD:275368 6/21 (29%)
C2H2 Zn finger 600..620 CDD:275368 6/19 (32%)
zf-H2C2_2 612..637 CDD:463886 11/24 (46%)
C2H2 Zn finger 628..646 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

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