DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kr-h1 and Gzf1

DIOPT Version :9

Sequence 1:NP_477466.1 Gene:Kr-h1 / 33861 FlyBaseID:FBgn0266450 Length:845 Species:Drosophila melanogaster
Sequence 2:NP_001101258.1 Gene:Gzf1 / 311508 RGDID:1562321 Length:707 Species:Rattus norvegicus


Alignment Length:561 Identity:152/561 - (27%)
Similarity:230/561 - (40%) Gaps:96/561 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 APKQIWIKDVLKKSGTELLDISKSPAKAVAVKKSPAKDSATTKMVYYSANQLLIKTEQSSQAQFC 76
            |.|:::::...||....|.:..||..:|....|.|...|...:.|         :.|.:|:::.|
  Rat   228 AGKKVFVEIPKKKYTRRLREQQKSAEEAAKNDKCPQDQSPDNERV---------EAEPASKSEAC 283

  Fly    77 LQVPPPLTATTTSVGLGVPPSGGQQEHFELLQTPQQRQMQLQLQDQHQQEQQQF--------VSY 133
                               |:..::|  |.||..:..:.:.:.:|..::::..|        ..|
  Rat   284 -------------------PASVERE--ESLQKVEGEKEEEEGKDGEEKKKSNFQCTVCDKAFLY 327

  Fly   134 QLAIQQHQKQQQQQQHESITNAAPTAAPSAQRIKTEPVGGFPASAAVVSQVRKPSASKPQFKCDQ 198
            :.:..:|.|.......|.:..........|.|...:            |..|...:|:..|.|:.
  Rat   328 EKSFLKHIKYHHGVATEVVYRCDTCGQTFANRCNLK------------SHQRHVHSSERHFPCEM 380

  Fly   199 CGMTFGSKSAHTSHT-KSHSKNQDLSLNGASGAGVAAPVSTAAIELNDAGLPVGIPKSPTIKPLA 262
            |...|..|.....|. :.|....:....|..|.|::   |..|:.|::                 
  Rat   381 CAKKFKRKKDVKRHVLQVHEGGGERHRCGQCGKGLS---SKTALRLHE----------------- 425

  Fly   263 NVAAGADPYQCNVCQKTFAVPARLIRHYRTHTGERPFECEFCHKLFSVKENLQVHRRIHTKERPY 327
            ....|..||.|..|...|:.|:.|..|.|.|||||||.|:.|...|:....|..|:|.||.|||:
  Rat   426 RTHTGDKPYGCTKCDAKFSQPSALKTHLRVHTGERPFVCDECGARFTQNHMLIYHKRCHTGERPF 490

  Fly   328 KCDVCGRAFEHSGKLHRHMRIHTGERPHKCSVCEKTFIQSGQLVIHMRTHTGEKPYKCPEPGCGK 392
            .|:.||::|.....|..|.|||||.:|.||.||.:||.|...|..|::.||||:||.|.:  |||
  Rat   491 MCETCGKSFASKEYLKHHNRIHTGSKPFKCEVCLRTFAQRNSLYQHIKVHTGERPYCCDQ--CGK 553

  Fly   393 GFTCSKQLKVHSRTHTGEKPYHCDICFRDFGYNHVLKLHRVQHYGSKCYK--CTICDETFKNKKE 455
            .||....|:.|.|.|||||||.|:.|.|.|.....|:.|...|..:..:|  ..|.|.:.||.  
  Rat   554 QFTQVNALQRHHRIHTGEKPYMCNACGRTFTDKSTLRRHTSIHDKNTPWKSFLVIVDGSPKND-- 616

  Fly   456 MEAHIKGHANEVPDDEAEAAAASAAASTSAGSSAGSPSLQGVSSN--SESSNHSPPSSPPATKKP 518
                 :|...|.||:| .|:...:....|.|.::...:|..|..|  :...|.|..::..|.   
  Rat   617 -----EGQKTEQPDEE-YASPKLSDRLLSFGENSHFNNLLEVQGNVPAVQENSSTDTACKAV--- 672

  Fly   519 RQARQPRVSKTVAATLSIPTSSPLSPSSLS-STYSPSASSM 558
                   ||:....|.||.....|:|.::| ..:.||.::|
  Rat   673 -------VSQDALLTTSISALGELTPQTVSMPAHLPSLTNM 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kr-h1NP_477466.1 C2H2 Zn finger 196..216 CDD:275368 5/20 (25%)
COG5048 <270..420 CDD:227381 72/149 (48%)
zf-C2H2 271..293 CDD:278523 8/21 (38%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
zf-H2C2_2 286..309 CDD:290200 12/22 (55%)
C2H2 Zn finger 301..321 CDD:275368 6/19 (32%)
zf-H2C2_2 313..338 CDD:290200 12/24 (50%)
C2H2 Zn finger 329..349 CDD:275368 7/19 (37%)
zf-H2C2_2 344..366 CDD:290200 13/21 (62%)
C2H2 Zn finger 357..377 CDD:275368 8/19 (42%)
zf-H2C2_2 370..396 CDD:290200 13/25 (52%)
C2H2 Zn finger 385..407 CDD:275368 9/21 (43%)
zf-H2C2_2 400..424 CDD:290200 14/23 (61%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
zf-C2H2 441..463 CDD:278523 5/23 (22%)
C2H2 Zn finger 443..463 CDD:275368 4/19 (21%)
Gzf1NP_001101258.1 BTB 21..125 CDD:279045
BTB 32..125 CDD:197585
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 149..221
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 243..309 17/95 (18%)
C2H2 Zn finger 318..338 CDD:275370 3/19 (16%)
C2H2 Zn finger 349..370 CDD:275368 4/32 (13%)
C2H2 Zn finger 408..428 CDD:275368 6/39 (15%)
COG5048 <411..539 CDD:227381 54/147 (37%)
C2H2 Zn finger 436..456 CDD:275368 7/19 (37%)
zf-H2C2_2 448..473 CDD:290200 13/24 (54%)
C2H2 Zn finger 464..484 CDD:275368 6/19 (32%)
zf-H2C2_2 476..501 CDD:290200 12/24 (50%)
C2H2 Zn finger 492..512 CDD:275368 7/19 (37%)
zf-H2C2_2 504..529 CDD:290200 14/24 (58%)
C2H2 Zn finger 520..540 CDD:275368 8/19 (42%)
zf-H2C2_2 532..557 CDD:290200 13/26 (50%)
COG5048 544..>601 CDD:227381 25/58 (43%)
C2H2 Zn finger 548..568 CDD:275368 9/21 (43%)
zf-H2C2_2 560..584 CDD:290200 13/23 (57%)
C2H2 Zn finger 576..596 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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