DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kr-h1 and Zfp418

DIOPT Version :9

Sequence 1:NP_477466.1 Gene:Kr-h1 / 33861 FlyBaseID:FBgn0266450 Length:845 Species:Drosophila melanogaster
Sequence 2:XP_006228239.1 Gene:Zfp418 / 292548 RGDID:1311663 Length:670 Species:Rattus norvegicus


Alignment Length:321 Identity:108/321 - (33%)
Similarity:147/321 - (45%) Gaps:48/321 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 FPASAAVVSQVRKPSASKPQFKCDQCGMTFGSKSAHTSHTKSHSKNQDLSLNGASGAGVAAPVST 238
            |...|.:....|:.:..|| :||.:||.:|...|..:.|.:.||..:                  
  Rat   283 FGQKATLRIHQRRHTGEKP-YKCGECGKSFCQSSNLSEHCRVHSGER------------------ 328

  Fly   239 AAIELNDAGLPVGIPKSPTIKPLANVAAGADPYQCNVCQKTFAVPARLIRHYRTHTGERPFECEF 303
             ..|..:.|...|...|  :........|..||:|:.|.:.|.....||.|.||||.|:|:||..
  Rat   329 -PFECLECGKAFGCHSS--LLRHQRTHTGEWPYECSDCGRLFRQIVSLITHQRTHTTEKPYECGQ 390

  Fly   304 CHKLFSVKENLQVHRRIHTKERPYKCDVCGRAFEHSGKLHRHMRIHTGERPHKCSVCEKTFIQSG 368
            |.|.||.|..|.||:|:||.|:||.|:.||::|..|..|.:|.:|||||:|::|..|...|.|..
  Rat   391 CEKSFSHKATLTVHQRVHTGEKPYHCEACGKSFSQSANLIKHSKIHTGEKPYECGECGLCFRQRA 455

  Fly   369 QLVIHMRTHTGEKPYKCPEPG--------------------------CGKGFTCSKQLKVHSRTH 407
            .|:.|.||||.|:||:|.|.|                          |||.:|....|..|.|.|
  Rat   456 TLMKHQRTHTSERPYECRECGKFFKQYFYLIEHRRIHTTTEFYECEQCGKSYTQKATLIRHQRVH 520

  Fly   408 TGEKPYHCDICFRDFGYNHVLKLHRVQHYGSKCYKCTICDETFKNKKEMEAHIKGHANEVP 468
            |||.||.|:.|.:.|.|...||.|:..|.|.:.|:|..|.:.|:....:..|.|.|....|
  Rat   521 TGESPYKCEECGKAFEYKSRLKRHQRTHTGERPYECAKCGKFFRESYNLAEHQKIHTKAKP 581

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kr-h1NP_477466.1 C2H2 Zn finger 196..216 CDD:275368 6/19 (32%)
COG5048 <270..420 CDD:227381 74/175 (42%)
zf-C2H2 271..293 CDD:278523 8/21 (38%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
zf-H2C2_2 286..309 CDD:290200 13/22 (59%)
C2H2 Zn finger 301..321 CDD:275368 10/19 (53%)
zf-H2C2_2 313..338 CDD:290200 13/24 (54%)
C2H2 Zn finger 329..349 CDD:275368 7/19 (37%)
zf-H2C2_2 344..366 CDD:290200 10/21 (48%)
C2H2 Zn finger 357..377 CDD:275368 7/19 (37%)
zf-H2C2_2 370..396 CDD:290200 15/51 (29%)
C2H2 Zn finger 385..407 CDD:275368 10/47 (21%)
zf-H2C2_2 400..424 CDD:290200 12/23 (52%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
zf-C2H2 441..463 CDD:278523 6/21 (29%)
C2H2 Zn finger 443..463 CDD:275368 5/19 (26%)
Zfp418XP_006228239.1 KRAB 35..>76 CDD:214630
KRAB 35..74 CDD:279668
COG5048 <190..396 CDD:227381 37/134 (28%)
C2H2 Zn finger 276..296 CDD:275368 3/12 (25%)
zf-H2C2_2 289..311 CDD:290200 7/22 (32%)
COG5048 300..657 CDD:227381 105/304 (35%)
C2H2 Zn finger 304..324 CDD:275368 6/19 (32%)
zf-H2C2_2 316..339 CDD:290200 5/41 (12%)
C2H2 Zn finger 332..352 CDD:275368 3/21 (14%)
zf-H2C2_2 344..369 CDD:290200 7/26 (27%)
C2H2 Zn finger 360..380 CDD:275368 7/19 (37%)
zf-H2C2_2 372..397 CDD:290200 14/24 (58%)
C2H2 Zn finger 388..408 CDD:275368 10/19 (53%)
zf-H2C2_2 401..425 CDD:290200 13/23 (57%)
C2H2 Zn finger 416..436 CDD:275368 7/19 (37%)
C2H2 Zn finger 444..464 CDD:275368 7/19 (37%)
zf-H2C2_2 457..481 CDD:290200 12/23 (52%)
C2H2 Zn finger 472..492 CDD:275368 3/19 (16%)
C2H2 Zn finger 500..520 CDD:275368 7/19 (37%)
zf-H2C2_2 513..537 CDD:290200 12/23 (52%)
C2H2 Zn finger 528..548 CDD:275368 7/19 (37%)
zf-H2C2_2 541..563 CDD:290200 8/21 (38%)
C2H2 Zn finger 556..576 CDD:275368 5/19 (26%)
zf-H2C2_2 568..593 CDD:290200 4/14 (29%)
C2H2 Zn finger 584..604 CDD:275368
zf-H2C2_2 596..621 CDD:290200
C2H2 Zn finger 612..632 CDD:275368
zf-H2C2_2 624..649 CDD:290200
C2H2 Zn finger 640..660 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.