DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pfdn1 and Pfdn1

DIOPT Version :9

Sequence 1:NP_001285661.1 Gene:Pfdn1 / 33857 FlyBaseID:FBgn0031776 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001101897.1 Gene:Pfdn1 / 361310 RGDID:1305603 Length:122 Species:Rattus norvegicus


Alignment Length:118 Identity:42/118 - (35%)
Similarity:77/118 - (65%) Gaps:0/118 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AQMDIELKKAFTEMQINKLETTKKIHMIDMKCDMVKTGKQKYQLTEKGTSSLADDTRVYQSVGRM 66
            |.:|:||||||||:|...::|.:|:.:.|::.:.:...|:...||:....:|.|:|.:|:.||||
  Rat     3 ASVDLELKKAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRM 67

  Fly    67 FLLTDVQNMREDLKARQEKCDKAIELLEKKKEFLQKSLKSQEDGLRELVQQRK 119
            |:|...:.:...|..:|:..::.|:.||:||.:|::|:|..||.:||::..|:
  Rat    68 FILQSKEVIHNQLLEKQKIAEEKIKELEQKKSYLERSVKEAEDNIREMLMARR 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pfdn1NP_001285661.1 Prefoldin_2 13..116 CDD:280154 33/102 (32%)
Pfdn1NP_001101897.1 Prefoldin_2 17..117 CDD:396482 31/99 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351824
Domainoid 1 1.000 72 1.000 Domainoid score I9163
eggNOG 1 0.900 - - E1_KOG3501
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 92 1.000 Inparanoid score I5002
OMA 1 1.010 - - QHG52313
OrthoDB 1 1.010 - - D1492856at2759
OrthoFinder 1 1.000 - - FOG0004846
OrthoInspector 1 1.000 - - oto97482
orthoMCL 1 0.900 - - OOG6_103090
Panther 1 1.100 - - LDO PTHR20903
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.770

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