DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13995 and srv-29

DIOPT Version :10

Sequence 1:NP_608986.1 Gene:CG13995 / 33851 FlyBaseID:FBgn0031770 Length:545 Species:Drosophila melanogaster
Sequence 2:NP_500948.2 Gene:srv-29 / 188460 WormBaseID:WBGene00005740 Length:316 Species:Caenorhabditis elegans


Alignment Length:221 Identity:40/221 - (18%)
Similarity:75/221 - (33%) Gaps:72/221 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 DIIKVKNLVANKEKFVKRRSRLIGPNGCTLKSLELLTNCYVLVQGATVSAIGPYKGLQCVRKVVE 195
            :|.:::|....:..|.|||      ||...|:.||...|     .|.|:.            |:.
 Worm    22 EIKRIENTTNRQVTFCKRR------NGLLKKAYELSVLC-----DAEVAL------------VIF 63

  Fly   196 ETMKNIHPIYNIKALMIKRELMKDENLREENW-------ERFLPRFQSKNTTKRNKPKVVKKKKE 253
            .|...::...|...:.:..|..|.:..::..|       ...:.|::...:...|.|.|.:    
 Worm    64 STRGRLYEYANNSFIYLLLEKKKKKKKKKNLWIYSSHVVRGTIERYKKACSDAVNPPSVTE---- 124

  Fly   254 YTPFPPPLQDSKIDKQLASGEYFLTDEQKRSKKRQEQVDKEKRDATVQKERRERDFVAPEETNRR 318
                             |:.:|:   :|:.||.|::..|       :|...|.   :..|.....
 Worm   125 -----------------ANTQYY---QQEASKLRRQIRD-------IQNSNRH---IVGESLGSL 159

  Fly   319 TAKANSADTPLDVKSLKGKIAKANKR 344
            ..|        ::|:|:|::.|...|
 Worm   160 NFK--------ELKNLEGRLEKGISR 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13995NP_608986.1 7tm_classA_rhodopsin-like 88..477 CDD:410626 40/221 (18%)
TM helix 2 107..130 CDD:410626
TM helix 3 144..174 CDD:410626 10/29 (34%)
TM helix 4 187..206 CDD:410626 2/18 (11%)
TM helix 5 246..377 CDD:410626 17/99 (17%)
TM helix 6 412..442 CDD:410626
TM helix 7 453..477 CDD:410626
srv-29NP_500948.2 7TM_GPCR_Srv 12..291 CDD:370977 40/221 (18%)
Blue background indicates that the domain is not in the aligned region.

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