DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13995 and ser-1

DIOPT Version :10

Sequence 1:NP_608986.1 Gene:CG13995 / 33851 FlyBaseID:FBgn0031770 Length:545 Species:Drosophila melanogaster
Sequence 2:NP_001024728.1 Gene:ser-1 / 181716 WormBaseID:WBGene00004776 Length:683 Species:Caenorhabditis elegans


Alignment Length:539 Identity:117/539 - (21%)
Similarity:200/539 - (37%) Gaps:150/539 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 QEPNQLPADYDYGNFSLGNPYDVDSEHSISPLTLLLLAVSYGLVVFGGV-------------VGN 88
            ::|..:||:..:...:|...:...|..||.    :.|..:.|:..|.||             :||
 Worm    13 EDPYYVPANESFATTALTPHFSTTSVWSIR----VQLIPTMGIYHFNGVALFLLPVLCLIGLIGN 73

  Fly    89 STLVLTLCSASSVRLRNP---LLLAVCIADLLVTGISAPVTLLNLAMNRRTRSLPLVLCKVIHYV 150
              .::.:..|:..||.|.   .|.::.:|||||..|..|:::: :.:.....:..:.:|.:..|.
 Worm    74 --FLVCVAIATDRRLHNVTNYFLFSLALADLLVCCIVMPLSIV-VEVRHGVWTWSVSMCLLYVYS 135

  Fly   151 QVMPVSASTISFFMLSLDRYATVKHPRLAQLRQRRYLHVSLALLSWLASAAISTPFLFAYKIIAK 215
            .|...|||.:...::|||||..:..|...:.|.:..:.:.:|:: |:.:..:|.|...       
 Worm   136 DVFLCSASIVHMSVISLDRYLGISQPLRTRNRSKTLIFIKIAIV-WVVTLLVSCPIAV------- 192

  Fly   216 SMVVKGGGAANTTPNPVSISCTSDLGANAMFMSF----IIFHTIAVFVLPGIGVLLNHYGVRRKL 276
                            :::..|:::..|...|.|    ||:.:...|::|              |
 Worm   193 ----------------LAMHDTANILRNNQCMIFSRYYIIYGSTMTFLIP--------------L 227

  Fly   277 CALSLT-ARAAHGELPLPIPILRRQTHMVIVTGCPNAQQAA---CGGG----------------- 320
            |.:.:| |:...        :|.:|..::       :|:|.   .|.|                 
 Worm   228 CIMGVTYAKTTQ--------LLNKQASIL-------SQKAGDKFNGNGLRRTMPHRKLGYARTYS 277

  Fly   321 TTADDT-SNGNGTGTGGGPMA----VSPGDI--QLHTLQPRQPGSAGSALEPGS------YRSSN 372
            .|.:.| :||...|..|..|:    ::.|:.  :|.|.:|....:....|:..|      .|:||
 Worm   278 ATVNGTIANGKAIGAHGRTMSSISNIANGETADRLGTSRPSINTNGHKQLQKASTINKWKSRTSN 342

  Fly   373 PISPRAMREIRAHSQRQRINRAGRGPATPGIPLPQTSTLRSRRHLANMLIASAVI------FIAC 431
            .::..|             |:.||..:.      ||:|    :.|||...|:.|:      |..|
 Worm   343 LVTNFA-------------NKVGRRSSL------QTAT----QDLANEHKATRVLAVVFACFFIC 384

  Fly   432 WAPHVFCIFYKNF-GNNQQCSQTSVYFSLLLGYFYSAISPVIYWALNHNSLRQS-----PCAPII 490
            |.|..|..|...| |.|.|.........|.|||..|.|:|:||...| ...||:     .|....
 Worm   385 WTPFFFINFLIGFGGENVQIPDWVASIFLWLGYVSSTINPIIYTVFN-KRFRQAFVRILRCQCFH 448

  Fly   491 RLRSMQNFLRSRFRTHTAP 509
            .||.........|.|...|
 Worm   449 PLRDSHQMYSRNFTTTIVP 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13995NP_608986.1 7tm_classA_rhodopsin-like 88..477 CDD:410626 95/436 (22%)
TM helix 2 107..130 CDD:410626 8/22 (36%)
TM helix 3 144..174 CDD:410626 11/29 (38%)
TM helix 4 187..206 CDD:410626 3/18 (17%)
TM helix 5 246..377 CDD:410626 32/168 (19%)
TM helix 6 412..442 CDD:410626 11/35 (31%)
TM helix 7 453..477 CDD:410626 9/23 (39%)
ser-1NP_001024728.1 7tmA_5-HT2 56..438 CDD:320180 101/461 (22%)
TM helix 1 57..83 CDD:320180 4/27 (15%)
TM helix 2 90..116 CDD:320180 8/26 (31%)
TM helix 3 129..159 CDD:320180 11/29 (38%)
TM helix 4 170..193 CDD:320180 4/46 (9%)
TM helix 5 211..240 CDD:320180 8/50 (16%)
TM helix 6 365..395 CDD:320180 10/29 (34%)
TM helix 7 406..431 CDD:320180 9/24 (38%)

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